View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1319_low_4 (Length: 665)

Name: NF1319_low_4
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1319_low_4
NF1319_low_4
[»] chr1 (6 HSPs)
chr1 (14-615)||(8753632-8754237)
chr1 (43-356)||(8744630-8744955)
chr1 (533-589)||(48715040-48715096)
chr1 (374-432)||(8732836-8732894)
chr1 (533-592)||(27793798-27793858)
chr1 (374-432)||(8718048-8718106)
[»] scaffold0321 (1 HSPs)
scaffold0321 (533-592)||(17990-18049)
[»] chr6 (7 HSPs)
chr6 (533-592)||(12877771-12877830)
chr6 (533-588)||(15951562-15951617)
chr6 (533-588)||(3836107-3836163)
chr6 (533-592)||(14579019-14579078)
chr6 (548-592)||(21183027-21183071)
chr6 (533-565)||(2936638-2936670)
chr6 (533-588)||(16712895-16712948)
[»] chr4 (8 HSPs)
chr4 (533-588)||(31768249-31768304)
chr4 (533-592)||(6664383-6664443)
chr4 (533-592)||(580597-580656)
chr4 (533-592)||(6685798-6685855)
chr4 (533-592)||(6660793-6660852)
chr4 (537-591)||(6682347-6682399)
chr4 (533-592)||(13250954-13251013)
chr4 (533-592)||(26947487-26947546)
[»] chr2 (7 HSPs)
chr2 (533-588)||(80483-80538)
chr2 (533-592)||(13438151-13438210)
chr2 (533-592)||(1234346-1234404)
chr2 (533-592)||(10938461-10938519)
chr2 (533-592)||(10941818-10941876)
chr2 (533-592)||(10944323-10944381)
chr2 (533-592)||(10947687-10947745)
[»] chr7 (2 HSPs)
chr7 (542-592)||(24509999-24510049)
chr7 (537-592)||(37006285-37006339)
[»] chr3 (1 HSPs)
chr3 (533-589)||(6240622-6240678)
[»] scaffold0933 (1 HSPs)
scaffold0933 (537-592)||(1546-1601)
[»] scaffold0019 (1 HSPs)
scaffold0019 (533-592)||(174091-174150)
[»] chr8 (4 HSPs)
chr8 (533-592)||(24681390-24681449)
chr8 (534-591)||(38059154-38059211)
chr8 (533-589)||(29260378-29260432)
chr8 (533-589)||(29275405-29275462)
[»] chr5 (1 HSPs)
chr5 (533-594)||(1354199-1354260)


Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 14 - 615
Target Start/End: Complemental strand, 8754237 - 8753632
Alignment:
Q  14 gaatgtgacttgtggaatatttcatgtgtcttcacttcaaatttgttgaacttgcgtttatggctgggttttgaagccaaggaaaaatcaacacctcgat 113  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8754237 gaatgtgacttgtggaatatttgatgtgtcttcacttaaaatttgttaaacttgcgtttatggctgggttttgaagccaaggaaaaatcaacacctcgat 8754138  T
Q  114 gaatggagctaattagaataagtacttaagatcacccttaaaaatttcaaagtactcagaaactatagagaaataattgtgcaaatccaataggagaatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8754137 gaatggagctaattagaataagtacttaagatcacccttaaaaatttcaaagtactcagaaacaatagagaaataattgtgcaaatccaataggagaatt 8754038  T
Q  214 gtttagagtgtcagagagaatgcaagtaaaagaaggaaaaa-----gagaatgatgatagctatgagaagnnnnnnnnn-cgaatgaggcatggacaagg 307  Q
    |||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||          ||||||||||||| ||||||    
T  8754037 gtttagagtgtcagagagaatgcaagtaaaagaaggaaaaattaaagagaatgatgatagctatgagaagaaaaaaaaaacgaatgaggcatgaacaagg 8753938  T
Q  308 gcaaggagaatgagatgtaagttttggaacatattgaatgtgactttgaaggacaatatataatgtattgtagtccaccaaaagggtattattgttgtca 407  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8753937 gcaaggagaatgagatgtaagttttggaacatattgcatgtgactttgaaggacaatatataatgtattgtagtccaccaaaagggtattattgttgtca 8753838  T
Q  408 ttgacttggctacaagaaagctagaatttatcaacatttgtgttaccctgattcactctaataataacgatgtattataaagcagtatgaagcaattgaa 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  8753837 ttgacttggctacaagaaagctagaatttatcaacatttgtgttaccctgattcactctaataataacgatgtat--taaagcagtatgaagcaattgaa 8753740  T
Q  508 aaaagagtcgatgttgttgtaaatttttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatatcttattcctatgttg 607  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8753739 aaaagagttgatgttgttgtaaatttttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatatcttattcctatgttg 8753640  T
Q  608 taattcca 615  Q
    ||||||||    
T  8753639 taattcca 8753632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 43 - 356
Target Start/End: Complemental strand, 8744955 - 8744630
Alignment:
Q  43 cttcacttcaaatttgttgaacttgcgtttatggctgggttttgaagccaaggaaaaatcaacacctcgatgaatggagctaattagaataagtacttaa 142  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||| ||||| |||||||||||||  ||||||||  |||||||| |||||| ||| ||    
T  8744955 cttcacttcaaatttgtcaaacttgcgtttatggctaggttttgaaaccaagaaaaaatcaacaccatgatgaatgatgctaattacaataagaactaaa 8744856  T
Q  143 ----------gatcacccttaaaaatttcaaagtactcagaaactatagagaaataattgtgcaaatccaataggagaattgtttagagtgtcagagaga 232  Q
              |||||||||||| ||||||||| |||||| |||  || ||||||||||||| |||||| ||||||| ||||||| ||||||  || ||||    
T  8744855 cccatttcaagatcacccttaacaatttcaaaatactcataaagaattgagaaataattgtacaaatctaataggaaaattgttaagagtgctagtgaga 8744756  T
Q  233 atgcaagtaaaagaaggaaaaagagaatgatgatagctatgagaag--nnnnnnnnncgaatgaggcatggacaagggcaaggagaatgagatgtaagtt 330  Q
    ||| |||||| |||||||||||||| ||||||||||||||||||||           ||||||||||||||| |||||||||||||||||||| || |||    
T  8744755 atgtaagtaagagaaggaaaaagaggatgatgatagctatgagaagaacaaagaaaacgaatgaggcatggagaagggcaaggagaatgagatctatgtt 8744656  T
Q  331 ttggaacatattgaatgtgactttga 356  Q
    |||||||||||||||||||| |||||    
T  8744655 ttggaacatattgaatgtgattttga 8744630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 589
Target Start/End: Complemental strand, 48715096 - 48715040
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaa 589  Q
    |||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||    
T  48715096 tttcaaaagtttcaaataatttgtgttccatattttcaattgagaaatatagaaaaa 48715040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 432
Target Start/End: Complemental strand, 8732894 - 8732836
Alignment:
Q  374 attgtagtccaccaaaagggtattattgttgtcattgacttggctacaagaaagctaga 432  Q
    |||||||||| | |||||||||||||||| ||||| |||||| ||||||| ||||||||    
T  8732894 attgtagtcctcaaaaagggtattattgtagtcatggacttgtctacaaggaagctaga 8732836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 27793858 - 27793798
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccata-tatttaattgagaaatatagaaaaatat 592  Q
    |||||||||||| ||||||||||||| ||||| | ||||||| |||||||||| |||||||    
T  27793858 tttcaaaagttttaaatattttgtgttccatattttttaattaagaaatataggaaaatat 27793798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 432
Target Start/End: Complemental strand, 8718106 - 8718048
Alignment:
Q  374 attgtagtccaccaaaagggtattattgttgtcattgacttggctacaagaaagctaga 432  Q
    |||||||||||| ||| ||| |||||||| ||||| |||||| ||||||| ||||||||    
T  8718106 attgtagtccacaaaatggggattattgtagtcatggacttgtctacaaggaagctaga 8718048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 533 - 592
Target Start/End: Original strand, 17990 - 18049
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17990 tttcaaaagtttcaaatattttgtgtcccatatttttaattgagaaatatagaaaaatat 18049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 12877830 - 12877771
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12877830 tttcaaaagtttcaaatattttgtgtcccatatttttaattgagaaatatagaaaaatat 12877771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 533 - 588
Target Start/End: Original strand, 15951562 - 15951617
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaa 588  Q
    |||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  15951562 tttcaaaagttttaaataatttgtgtcccatatttttaattgagaaatatagaaaa 15951617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 588
Target Start/End: Complemental strand, 3836163 - 3836107
Alignment:
Q  533 tttcaaaagtttcaaatatttt-gtgtcccatatatttaattgagaaatatagaaaa 588  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  3836163 tttcaaaagtttcaaatatttttgtgttccatatttttaattgagaaatatagaaaa 3836107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 592
Target Start/End: Original strand, 14579019 - 14579078
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    |||||||||||||||||||||| | | | |||| ||||||||||||||||||||||||||    
T  14579019 tttcaaaagtttcaaatattttatattctatatttttaattgagaaatatagaaaaatat 14579078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 592
Target Start/End: Complemental strand, 21183071 - 21183027
Alignment:
Q  548 atattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||| |||||| || |||||||||||||||||||||||    
T  21183071 atattttgtgttccatattttcaattgagaaatatagaaaaatat 21183027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 565
Target Start/End: Complemental strand, 2936670 - 2936638
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatat 565  Q
    |||||||| ||||||||||||||||||||||||    
T  2936670 tttcaaaaatttcaaatattttgtgtcccatat 2936638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 588
Target Start/End: Complemental strand, 16712948 - 16712895
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaa 588  Q
    |||||||||||| |||||||  ||||||||||  |||||| |||||||||||||||    
T  16712948 tttcaaaagttttaaatatt--gtgtcccataattttaatagagaaatatagaaaa 16712895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 533 - 588
Target Start/End: Complemental strand, 31768304 - 31768249
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaa 588  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31768304 tttcaaaagtttcaaatattttgtgtcccatatttttaattgagaaatatagaaaa 31768249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 6664443 - 6664383
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccata-tatttaattgagaaatatagaaaaatat 592  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  6664443 tttcaaaagtttcaaatattttgtgtcccatattttttaattgagaaatatagaaaaatat 6664383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 580656 - 580597
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    |||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||    
T  580656 tttcaaaagttttaaatattttgtgtcccatattttcaattgagaaatatagaaaaatat 580597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 592
Target Start/End: Original strand, 6685798 - 6685855
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||    
T  6685798 tttcaaaagtttcaaatattttgt--cccatatttttaattgagaaatataaaaaaatat 6685855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 6660852 - 6660793
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatattt--aattgagaaatatagaaaaatat 592  Q
    ||||||||||||||||||||  ||||||||||| |||  |||||||||||||||||||||||    
T  6660852 tttcaaaagtttcaaatatt--gtgtcccatatttttttaattgagaaatatagaaaaatat 6660793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 591
Target Start/End: Original strand, 6682347 - 6682399
Alignment:
Q  537 aaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaata 591  Q
    ||||||||||||||||||||  || |||| |||||||||||||||||||||||||    
T  6682347 aaaagtttcaaatattttgt--cctatatttttaattgagaaatatagaaaaata 6682399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 13251013 - 13250954
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    |||||||||||||||||||||| |||||||||| || |||||| | |||| |||||||||    
T  13251013 tttcaaaagtttcaaatattttatgtcccatattttcaattgaaatatatcgaaaaatat 13250954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 533 - 592
Target Start/End: Original strand, 26947487 - 26947546
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    |||||||||| | |||||||||||||||||||| || |||||||||||||  ||||||||    
T  26947487 tttcaaaagtctaaaatattttgtgtcccatattttcaattgagaaatatctaaaaatat 26947546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 533 - 588
Target Start/End: Original strand, 80483 - 80538
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaa 588  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  80483 tttcaaaagtttcaaatattttgtgtcccatatttttaattgagaaatatagaaaa 80538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 13438210 - 13438151
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||||  |||||||||||||||| || || |||||||||||||||||||||||    
T  13438210 tttcaaaagttttgaatattttgtgtcccacattttcaattgagaaatatagaaaaatat 13438151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 592
Target Start/End: Original strand, 1234346 - 1234404
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||| ||| ||||||||||| ||||| ||  ||||||||||||||||||||||    
T  1234346 tttcaaaagtt-caattattttgtgtctcatattttctattgagaaatatagaaaaatat 1234404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 10938519 - 10938461
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||| ||| ||||||||||| ||||| ||  ||||||||||||||||||||||    
T  10938519 tttcaaaagtt-caattattttgtgtctcatattttctattgagaaatatagaaaaatat 10938461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 10941876 - 10941818
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||| ||| ||||||||||| ||||| ||  ||||||||||||||||||||||    
T  10941876 tttcaaaagtt-caattattttgtgtctcatattttctattgagaaatatagaaaaatat 10941818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 10944381 - 10944323
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||| ||| ||||||||||| ||||| ||  ||||||||||||||||||||||    
T  10944381 tttcaaaagtt-caattattttgtgtctcatattttctattgagaaatatagaaaaatat 10944323  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 10947745 - 10947687
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||| ||| ||||||||||| ||||| ||  ||||||||||||||||||||||    
T  10947745 tttcaaaagtt-caattattttgtgtctcatattttctattgagaaatatagaaaaatat 10947687  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 542 - 592
Target Start/End: Complemental strand, 24510049 - 24509999
Alignment:
Q  542 tttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  24510049 tttcaaatattttgtgtcctatatttttaattgagaaatatagaaaaatat 24509999  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 592
Target Start/End: Original strand, 37006285 - 37006339
Alignment:
Q  537 aaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  37006285 aaaagtttcaaatattttgtgtcccatatttttaatttagaaatat-gaaaaatat 37006339  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 589
Target Start/End: Complemental strand, 6240678 - 6240622
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaa 589  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||    
T  6240678 tttcaaaagttttaaatattttgtgtcctatatttttaattgagaaatatataaaaa 6240622  T

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Target: scaffold0933 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 592
Target Start/End: Complemental strand, 1601 - 1546
Alignment:
Q  537 aaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    |||||||||||||||||||||||||||||  | ||||||||||||| |||||||||    
T  1601 aaaagtttcaaatattttgtgtcccatattatcaattgagaaatatcgaaaaatat 1546  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 592
Target Start/End: Original strand, 174091 - 174150
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||||||||||||||||||| ||||  || ||||||||||||| |||||||||    
T  174091 tttcaaaagtttcaaatattttgtgtctcatactttcaattgagaaatatcgaaaaatat 174150  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 592
Target Start/End: Complemental strand, 24681449 - 24681390
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatat 592  Q
    ||||||||||| |||||||||||||||  | || ||||||||||||||||||||||||||    
T  24681449 tttcaaaagttacaaatattttgtgtcttagatttttaattgagaaatatagaaaaatat 24681390  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 591
Target Start/End: Original strand, 38059154 - 38059211
Alignment:
Q  534 ttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaata 591  Q
    ||||||||||| |||||||||||||| |||   |||||||||||||||||||||||||    
T  38059154 ttcaaaagttttaaatattttgtgtcacattattttaattgagaaatatagaaaaata 38059211  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 589
Target Start/End: Original strand, 29260378 - 29260432
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaa 589  Q
    |||||||||||||||||||||| |  ||||||| ||||||||||||||||| |||||    
T  29260378 tttcaaaagtttcaaatatttttt--cccatatttttaattgagaaatataaaaaaa 29260432  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 589
Target Start/End: Original strand, 29275405 - 29275462
Alignment:
Q  533 tttcaaaagtttcaaatattttgt-gtcccatatatttaattgagaaatatagaaaaa 589  Q
    |||||||||||||||| ||||| | ||| ||||| ||||||||||||||||| |||||    
T  29275405 tttcaaaagtttcaaacatttttttgtctcatatttttaattgagaaatataaaaaaa 29275462  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 594
Target Start/End: Complemental strand, 1354260 - 1354199
Alignment:
Q  533 tttcaaaagtttcaaatattttgtgtcccatatatttaattgagaaatatagaaaaatatct 594  Q
    |||||||||||| |||||  ||||||| ||||| ||||||||||||||||||||||| ||||    
T  1354260 tttcaaaagttttaaataccttgtgtctcatatttttaattgagaaatatagaaaaaaatct 1354199  T

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