View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_5 (Length: 599)
Name: NF1319_low_5
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 30 - 582
Target Start/End: Complemental strand, 11859509 - 11858957
Alignment:
| Q |
30 |
caagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaacaagtatcgcgg |
129 |
Q |
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||||||||||| ||||||||| ||| ||| ||||||||| |||||| |||||| | ||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
11859509 |
caagattcctcttgattaagcccctgcaacttcaaaacatgtctagcagcaattttgttggcaacatggctgcttcgtgttgttgtaacaagtatgacgg |
11859410 |
T |
|
| Q |
130 |
tatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattcttaatctcaattcgcaaatcatctataacaagtaagat |
229 |
Q |
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| T |
11859409 |
tatcagtccttccacctgcagcctgcgctaatttcttctgcaacttctcgagatcaccattctcaatctcaattcgcaaatcatctataacaagtaagac |
11859310 |
T |
|
| Q |
230 |
gcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtgatgagggccattgatccaaattgcttggaaaccagaa |
329 |
Q |
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|||||||| |||| || || |||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
11859309 |
gcgtttcttatgaacataccgatcagtaacgctttttactatggattcaacatcaaattggtgatgaagaccattgatccaaattgcttggaaaccagaa |
11859210 |
T |
|
| Q |
330 |
ctccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagcagtat |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11859209 |
ctccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagcagtat |
11859110 |
T |
|
| Q |
430 |
caaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaacagctacatgctcagtacttttctcaaaatctgtgtatgc |
529 |
Q |
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| T |
11859109 |
caaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaacagctacatgctcagtacttttctcaaaatctttgtatgc |
11859010 |
T |
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| Q |
530 |
caactttcttttctcattagtattactaataactgttttttcttccttcagca |
582 |
Q |
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| T |
11859009 |
caactttcttttctcattagtattactaataactgttttttcttccttcagca |
11858957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 30 - 564
Target Start/End: Complemental strand, 12038292 - 12037773
Alignment:
| Q |
30 |
caagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaacaagtatcgcgg |
129 |
Q |
| |
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||||| ||||| ||||||||| ||| ||| ||||||||| ||| || |||||||| || ||| |||||||| || ||||| || || ||||| || | |
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| T |
12038292 |
caagaatcctcttgattaagcccctgcaacttcaaaacatgtccagcagcaatgttgtcggcgacatggttactacgtgtagt---aatgagtatggccg |
12038196 |
T |
|
| Q |
130 |
tatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattct---taatctcaattcgcaaatcatctataacaagtaa |
226 |
Q |
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|||||| | || ||| |||| || ||||||||||||||||||||| |||| |||| || ||||||||| || ||||||||||||||||||||| |
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| T |
12038195 |
tatcagcacggccaccaacagcttcagttaatttcttctgcaacttctcaagataatcaggctcattaatctcaaatctcaaatcatctataacaagtaa |
12038096 |
T |
|
| Q |
227 |
gatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtgatgagggccattgatccaaattgcttggaaacca |
326 |
Q |
| |
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|| |||||||||||||| ||||| | | ||||| |||| |||| |||||||||||||| ||| ||||||||||||| ||| || ||| |
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| T |
12038095 |
gaggcgtttctcatgatgagact---cggcaacactttttgctatagattcaacatcaaa--ggtt----------ttgatccaaattggttgtaaccca |
12038011 |
T |
|
| Q |
327 |
gaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagcag |
426 |
Q |
| |
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|| || || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| |
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| T |
12038010 |
aaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaacaataacaataacaacaggaacagcag |
12037911 |
T |
|
| Q |
427 |
tatcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaacagctacatgctcagtacttttctcaaaatctgtgta |
526 |
Q |
| |
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|||| || |||| |||| |||||||||||||| ||| | |||||| ||||||| |||||||||||||||| ||| |||||||||| ||| | |
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| T |
12037910 |
catcagtgttcttcaggttcaccagtttatctataagctcttccttctcattttctcttccaacagctacatgcttggtatttttctcaaagtcttcaca |
12037811 |
T |
|
| Q |
527 |
tgccaactttcttttctcattagtattactaataactg |
564 |
Q |
| |
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||| |||||||||||||| |||||||||||||||||| |
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| T |
12037810 |
tgcagactttcttttctcagtagtattactaataactg |
12037773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 334 - 497
Target Start/End: Complemental strand, 11827037 - 11826868
Alignment:
| Q |
334 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagca------gt |
427 |
Q |
| |
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||||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | || |||||||||| || |
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| T |
11827037 |
ctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaatagcaataaaaacaggaacagcagcatccgt |
11826938 |
T |
|
| Q |
428 |
atcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaacagctaca |
497 |
Q |
| |
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||| | | |||| |||||||||| ||||||||| || |||||||| ||||||| |||||||||||| |
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| T |
11826937 |
atcggcgctcttcaggttcagcagttgatctataatttctttcttctcattttctcttccaacagctaca |
11826868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 490
Target Start/End: Original strand, 11903281 - 11903466
Alignment:
| Q |
305 |
gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaata |
404 |
Q |
| |
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||||||||||| || ||||||| || |||||||||| |||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
11903281 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatg |
11903380 |
T |
|
| Q |
405 |
gcaattacaa-aaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaac |
490 |
Q |
| |
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|||| ||| || ||| | || | || ||||||| |||||| |||| |||||||||||||||||| || ||||||||||||| |
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| T |
11903381 |
acaataacaggaacgaa-atcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttctctgccaac |
11903466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 11827257 - 11827171
Alignment:
| Q |
144 |
ccagcagcctccattaatttcttctgcaacttcttgagatcatca---ttcttaatctcaattcgcaaatcatctataacaagtaag |
227 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||| ||| |||||| || |||||| |||||| |||||||||||||| ||||||| |
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| T |
11827257 |
ccagcaacctccatcaatttcttctgtaacttctcgaggtcatcatgcttattaatcgcaattctcaaatcatctataataagtaag |
11827171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 11730895 - 11730826
Alignment:
| Q |
334 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
403 |
Q |
| |
|
|||||||||||||||| || ||||| || || ||||||||||| || || ||||| |||||||||||||| |
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| T |
11730895 |
ctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaat |
11730826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 11730451 - 11730382
Alignment:
| Q |
334 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
403 |
Q |
| |
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|||||||||||||||| | ||||| ||||| ||||||||||| || || ||||| | |||||||||||| |
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| T |
11730451 |
ctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaat |
11730382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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