View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1319_low_54 (Length: 268)

Name: NF1319_low_54
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1319_low_54
NF1319_low_54
[»] chr5 (3 HSPs)
chr5 (42-239)||(32573781-32573978)
chr5 (41-141)||(32581158-32581256)
chr5 (95-186)||(32610815-32610906)
[»] chr1 (1 HSPs)
chr1 (71-124)||(1950128-1950181)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 32573781 - 32573978
Alignment:
Q  42 caaagttgtaaaaacccttcataaattttgaatcattattacatgtatgttaagtatatcaatgtgttgtgcttgcccttttaacattcttaataaggaa 141  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32573781 caaagttgtaaaaacccttcataaattttggatcattattacatgtatgttaaatatatcaatgtgttgtgcttgcccttttaacattcttaataaggaa 32573880  T
Q  142 cataacaaagtgactaaccataagaattcattatttttaaactaannnnnnncatcattattttaatatttcacgttagtaaagaaaaaagttatatt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  32573881 cataacaaagtgactaaccataagaattcattatttttaaactaatttttttcatcattattttaatatttcacgttagtaaagaaaaaagttatatt 32573978  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 32581158 - 32581256
Alignment:
Q  41 acaaagttgtaaaaacccttcataaattttgaatcattattacatgtatgttaagtatatcaatgtgttgtgcttgcccttttaacattcttaataagga 140  Q
    |||||||||||||||| ||  | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || |||| ||| |||||||||||    
T  32581158 acaaagttgtaaaaactct--aaaaattttgaatcattattaaatgtatgttaagtatatcaatgtgttgtgtttgtccctttagcatacttaataagga 32581255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 32610815 - 32610906
Alignment:
Q  95 gtatatcaatgtgttgtgcttgcccttttaacattcttaataaggaacataacaaagtgactaaccataagaattcattatttttaaactaa 186  Q
    |||||| ||||||||||| ||| || ||| ||||   ||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||||    
T  32610815 gtatataaatgtgttgtgtttgtccctttgacatatctaataaggaacataacaaactgaataaccataagaattcattctttttgaactaa 32610906  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 1950128 - 1950181
Alignment:
Q  71 gaatcattattacatgtatgttaagtatatcaatgtgttgtgcttgccctttta 124  Q
    ||||||||||||  ||| | ||||||| |||||||||||||||||| |||||||    
T  1950128 gaatcattattaagtgtctcttaagtagatcaatgtgttgtgcttgtcctttta 1950181  T

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