View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_6 (Length: 564)
Name: NF1319_low_6
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 162 - 536
Target Start/End: Complemental strand, 12121447 - 12121077
Alignment:
| Q |
162 |
acccttgtccttcaggttccttgtcttaaacccattccacttctttagaatcagtc-attctacttccttagccaccctttcgattttctcccataaatt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| || |
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| T |
12121447 |
acccttgtccttcaggttccttgtcttaaacccattccacttctttagaatcagtccattctacttccttagccaacctttcgattttctccc-----tt |
12121353 |
T |
|
| Q |
261 |
gaaccatttatcaccgctctgctgcttgaaaatcacctacttcatgaggagttacctttgtaagatagataaccactgtatgttattaatattacatcac |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12121352 |
gaaccatttatcaccgctctgctgcttgaaaatcacctgcttcatgaggagttacctttgtaagatagataaccactgtatgttcttaatattacatcac |
12121253 |
T |
|
| Q |
361 |
cttgttcaacatcaactagtgctcgaaaagttgcaaagaatgatcttctcagaatcagaggaccctcttccacatcactaatctccatgaccaccacgtc |
460 |
Q |
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|||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12121252 |
cttgttcaacatcaacaagtgctcgaaaagttgcgaggaatgatcttctcaaaatcagaggaccctcttccacatcactaatctccatgaccactacgtc |
12121153 |
T |
|
| Q |
461 |
tataagaaacacaaaagtgccaattaataccaaaatgtactttacgatgccaccaaaagtttctaatgtacctttt |
536 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |||||| ||||| |
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| T |
12121152 |
tataagaaacacaaaagtgccaattattaccaaaatgtactttaccatgcgaccaaaagtttccaatgtaactttt |
12121077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 21260032 - 21260183
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21260032 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactctt |
21260131 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
21260132 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21260183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 21264613 - 21264764
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21264613 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactctt |
21264712 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatcaatttgaca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
21264713 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatcagtttgaca |
21264764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 6847756 - 6847899
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6847756 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactctt |
6847855 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatca |
154 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6847856 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatca |
6847899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 6843153 - 6843296
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
6843153 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaatagattttttacttgtatatatagaatacctttacactctt |
6843252 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatca |
154 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6843253 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatca |
6843296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 47805185 - 47805328
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47805185 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactctt |
47805284 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatca |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47805285 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatca |
47805328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 47800603 - 47800746
Alignment:
| Q |
11 |
atcatagggatttgatttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactctt |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
47800603 |
atcatagggatttgatttgtaatcaaaaataatttaccattatttcaatctagtaaaaataggttttttacttgtatatatagaatacctttacactctt |
47800702 |
T |
|
| Q |
111 |
gtaatgtagatttggaaagaaataaaatgagacctactctatca |
154 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
47800703 |
gtaatgtagatttggaaagaaataaaatgagacctactgtatca |
47800746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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