View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_60 (Length: 251)
Name: NF1319_low_60
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2684452 - 2684692
Alignment:
| Q |
1 |
atttatacatcacatctatcacatcattttgtctattcaagtgttcaaaaaattgcttctctattctcaatctctatcttaagaattccttggcaccagt |
100 |
Q |
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|||||||||| | ||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
2684452 |
atttatacatgaaatccatcacatcattttgtctattcaagtgttcaaaaagttgcttctctcttctcaatctctatcttaagaattccttggcactagt |
2684551 |
T |
|
| Q |
101 |
agtttgctcaaaaattaaatttacttatctttttgaatgacaccaataaaagagcattattatagccaagtctatttaagaagataattgaaagggaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
2684552 |
agtttgctcaaaaattaaatttacttatctttttgagtgacatcaataaaagagcattattatagccaagtttgtttaagaagataattgaaagtgaaaa |
2684651 |
T |
|
| Q |
201 |
attcagttcaaaaccatgtattatctttatatatagtataa |
241 |
Q |
| |
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| T |
2684652 |
aatcagttcaaaaccatgtattatctttatatatagtataa |
2684692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 4505849 - 4505733
Alignment:
| Q |
124 |
cttatctttttgaatgacaccaataaaagagcattattatagccaagtctatttaagaagataattgaaagggaaaaattcagttcaaaaccatgtatta |
223 |
Q |
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||||||||||||||||||||||| |||| || |||||||||| ||| | | |||||| |||| || || |||||| |||| ||||||||||||| |
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| T |
4505849 |
cttatctttttgaatgacaccaacaaaataggattattatagtcaaatatgtttaagggtataactggaaatgaaaaagtcagcctaaaaccatgtattc |
4505750 |
T |
|
| Q |
224 |
tctttatatatagtata |
240 |
Q |
| |
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| T |
4505749 |
tctttatatatagtata |
4505733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 47410526 - 47410642
Alignment:
| Q |
124 |
cttatctttttgaatgacaccaataaaagagcattattatagccaagtctatttaagaagataattgaaagggaaaaattcagttcaaaaccatgtatta |
223 |
Q |
| |
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|||||||||||||||||||||||||||| | |||| |||||| ||| | | ||||| ||||||||||| ||||| || | |||| | ||||||| |
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| T |
47410526 |
cttatctttttgaatgacaccaataaaatatcatttttatagtcaaatttgtttaattgtataattgaaagtgaaaatgacactccaaacctatgtattt |
47410625 |
T |
|
| Q |
224 |
tctttatatatagtata |
240 |
Q |
| |
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||||||||||||||||| |
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| T |
47410626 |
tctttatatatagtata |
47410642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 34151161 - 34151105
Alignment:
| Q |
124 |
cttatctttttgaatgacaccaataaaagagcattattatagccaagtctatttaag |
180 |
Q |
| |
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||||||||||| ||||||||||| |||| || |||||||||| ||| |||||||||| |
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|
| T |
34151161 |
cttatctttttaaatgacaccaacaaaataggattattatagtcaaatctatttaag |
34151105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 33218445 - 33218406
Alignment:
| Q |
124 |
cttatctttttgaatgacaccaataaaagagcattattat |
163 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
33218445 |
cttatctttttgaatgacaccaataaaatagcattcttat |
33218406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 7301640 - 7301528
Alignment:
| Q |
127 |
atctttttgaatgacaccaataaaagagcattattatagccaagtctatttaagaagataattgaaagggaaaaattcagttcaaaaccatgtattatct |
226 |
Q |
| |
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|||||||||||| ||||||| || | | ||| |||||| ||| | | ||||| | |||||||||||||||||| ||| | ||||||||| ||| ||| |
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| T |
7301640 |
atctttttgaataacaccaacaatataatatttttatagacaaatttgtttaatgatataattgaaagggaaaaagtcaatccaaaaccataaattctct |
7301541 |
T |
|
| Q |
227 |
ttatatatagtat |
239 |
Q |
| |
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|| |||||||||| |
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| T |
7301540 |
ttgtatatagtat |
7301528 |
T |
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