View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_62 (Length: 251)
Name: NF1319_low_62
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 29852442 - 29852677
Alignment:
| Q |
1 |
cccgagactcctgagtcagcgaagttacaccacgccggaggtttaaagcaaagtctgcagtgccataacaccgacctcgactctttccaccagcaacctc |
100 |
Q |
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| T |
29852442 |
cccgagactcctgagtcagcgaagttacaccacgccggaggtttaaagcaaagtctgcagtgccataacaccgacctcgactctttccaccagcaacctc |
29852541 |
T |
|
| Q |
101 |
tttccacaattcaagtttcgtcgccccgtctatctcctgcatcccattctgggaggccttaccattttgtgtttgtacctccttcagacgatcgtgatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29852542 |
tttccacaattcaagtttcgtcgccccgtctatctcctgcatcccattctgggaggccttaccattttgtgtttgtacctccttcagacgatcgtgatat |
29852641 |
T |
|
| Q |
201 |
tgtttctagaaaaaaggaaacataacttaatatcat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29852642 |
tgtttctagaaaaaaggaaacataacttaatatcat |
29852677 |
T |
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