View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_63 (Length: 251)
Name: NF1319_low_63
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 1034379 - 1034615
Alignment:
| Q |
2 |
atatctaaaattacctccttatgatccacaggcacagaagggtacaatctaagagcttctgaaagagcagcatgcaaataatccatcttcttaatctcct |
101 |
Q |
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| T |
1034379 |
atatctaaaattacctccttacgatccacaggcacagaagggtacaatctaagagcttctgaaagagcagcatgcaaataatccatcttcttaatctcct |
1034478 |
T |
|
| Q |
102 |
ctgacctaaatctcaaacaatcatcaaactcatccttcttgatatccaccaccctgcaaatttcttctaatattttctcctcaacttcatgattctgatc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034479 |
gtgacctaaatctcaaacaatcatcaaactcatccttcttgatatccaccaccctgcaaatttcttctaatattttctcctcaacttcatgattctgatc |
1034578 |
T |
|
| Q |
202 |
aaccaaccagaaaaaccagctcaaagcaactgaagaa |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
1034579 |
aaccaaccagaaaaaccagctcaaagcaactgaagaa |
1034615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 13897319 - 13897558
Alignment:
| Q |
11 |
attacctccttatgatccacaggcacagaagggtacaatctaagagcttctgaaagagcagcatgcaaataatccatcttcttaatctcctctgacctaa |
110 |
Q |
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|||||||||||| ||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | | | |
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| T |
13897319 |
attacctccttacaatccacaggaacagaaggatataatctaagagcttctgaaagagctgcatgcaaataatccatcttcttaatctcctcaggcttga |
13897418 |
T |
|
| Q |
111 |
atctcaaacaatcatcaaactcatccttcttgatatccacc------------accctgcaaatttcttctaatattttctcctcaacttcatgattctg |
198 |
Q |
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| T |
13897419 |
atctcaaagaatcattaaacacttccttattaatatcctccctttgacacacaaccctgcaaatctcttctaatattttctcctcaacttcatgattctg |
13897518 |
T |
|
| Q |
199 |
atcaaccaaccagaaaaaccagctcaaagcaactgaagaa |
238 |
Q |
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| T |
13897519 |
atcaaccaaccagaaaaaccagcttaaagcaactgaagaa |
13897558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 13887897 - 13887652
Alignment:
| Q |
11 |
attacctccttatgatccacaggcacagaagggtacaatctaagagcttctgaaagagcagcatgcaaataatccatcttcttaatctcctctgacctaa |
110 |
Q |
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|||||||| |||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | | | |
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| T |
13887897 |
attacctctttatgatccataggaacagaaggatacaatctaagagtttctgaaagagcagcatgcaaataacccatcttcttaatctcctcaggtttga |
13887798 |
T |
|
| Q |
111 |
atctcaaacaatcatcaaactcatccttcttgatat------------------ccaccaccctgcaaatttcttctaatattttctcctcaacttcatg |
192 |
Q |
| |
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|||| ||| |||||| |||| | ||||| || |||| ||| ||||||||||| |||||||||||||||||||| |||||||| |
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| T |
13887797 |
atcttaaagaatcattaaacacttccttattaatattaatatcctccctttgactcacaaccctgcaaatctcttctaatattttctcctccacttcatg |
13887698 |
T |
|
| Q |
193 |
attctgatcaaccaaccagaaaaaccagctcaaagcaactgaagaa |
238 |
Q |
| |
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|||||||| || ||||||||||||||||| ||||||||||||||| |
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| T |
13887697 |
attctgattaagtaaccagaaaaaccagcttaaagcaactgaagaa |
13887652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 7295502 - 7295589
Alignment:
| Q |
148 |
caccaccctgcaaatttcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaaccagctcaaagcaactgaagaa |
238 |
Q |
| |
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||||||||||||||| ||| ||| |||| ||||| | ||||| ||| ||||||| ||||||||||| || |||||||||||| ||||| |
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| T |
7295502 |
caccaccctgcaaatctctacta---ttttttcctccatttcattattatgatcaagcaaccagaaaagccgcctcaaagcaactaaagaa |
7295589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 28666653 - 28666895
Alignment:
| Q |
8 |
aaaattacctccttatgatccacaggcacagaagggtacaatctaagagcttctgaaagagcagcatgcaaataatccatcttcttaatctcctctgacc |
107 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||| || ||||| |||| ||| || | | |||||||||||| |||||||| || ||||| || | || |
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| T |
28666653 |
aaaattacctccttgtgatcaacaggaacagaaggatataatctgagagtttcagataaacaagcatgcaaatagtccatcttttttatctcttcaggcc |
28666752 |
T |
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| Q |
108 |
taaatctcaaacaatcatcaaactcatccttcttgatatc------------caccaccctgcaaatttcttctaatattttctcctcaacttcatgatt |
195 |
Q |
| |
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||||| ||||| ||| ||||| || |||||||| ||||| ||||||| |||| || ||||||||||| |||||||| ||||||||||| |
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| T |
28666753 |
taaatatcaaagaattttcaaattcttccttctttatatcatttctctgactcaccaccttgcatatctcttctaatatcttctcctccacttcatgatt |
28666852 |
T |
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| Q |
196 |
ctgatcaaccaaccagaaaaaccagctcaaagcaactgaagaa |
238 |
Q |
| |
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|||||||| ||||| |||||||| |||||||| || |||||| |
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| T |
28666853 |
ctgatcaagtaaccaaaaaaaccaactcaaagccacagaagaa |
28666895 |
T |
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