View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_65 (Length: 249)
Name: NF1319_low_65
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 19884668 - 19884814
Alignment:
| Q |
47 |
atagcatgtttgctataccggtgaaaatgnnnnnnnnnnnccacgttttttcaaaagctacaaaagttagcttctttgttttcannnnnnncttgccttg |
146 |
Q |
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| T |
19884668 |
atagcatgtttgctataccggtgaaaatgaaaaaaaa---ccacgttttttgaaaagctacaaaagttagcttctttattttcacttttttcttgccttg |
19884764 |
T |
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| Q |
147 |
ggaagcgatatttcatgccaccctgatttgaaaatcaaatctaaacaggc |
196 |
Q |
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||||||| |||||||||||||| |||||||||| ||||||| |||||||| |
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| T |
19884765 |
ggaagcgctatttcatgccaccgtgatttgaaactcaaatccaaacaggc |
19884814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 26841010 - 26841164
Alignment:
| Q |
43 |
atatatagcatgtttgctataccggtgaaaatgnnnnnnnnnnnccacgttttttcaaaagctacaaaagttagcttctttgttttcannnnnnncttgc |
142 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |||||| ||||| |
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| T |
26841010 |
atatctagcatgtttgctataccggtgaaaatgaaaaaaaa---ccacgttttttcaaaagctataaaagttaacttctttattttcacttttttcttgc |
26841106 |
T |
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| Q |
143 |
cttgggaagcgatatttcatgccaccctgatttgaaaatcaaatctaaacaggctaat |
200 |
Q |
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| T |
26841107 |
cttgggaagcgctatttcatgccaccgtgatttgaaactcaaatccaaacaggctaat |
26841164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 43679683 - 43679827
Alignment:
| Q |
48 |
tagcatgtttgctataccggtgaaaatgnnnnnnnnnnnccacgttttttcaaaagctacaaaagttagcttctttgtttt-cannnnnnncttgccttg |
146 |
Q |
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| T |
43679683 |
tagcatgtttgctataccggtgaaaatgaaaaaaaaa--ccacgtttgttcaaaagctacaaaagttaacttctttgtttttcacttttttcttgccttg |
43679780 |
T |
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| Q |
147 |
ggaagcgatatttcatgccaccctgatttgaaaatcaaatctaaaca |
193 |
Q |
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| T |
43679781 |
ggaagcgatatttcatgccatcgtgatttgaaaatctaatccaaaca |
43679827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 30707465 - 30707574
Alignment:
| Q |
87 |
ccacgttttttcaaaagctacaaaagttagcttctttgttttcannnnnnncttgccttgggaagcgatatttcatgccaccctgatttgaaaatcaaat |
186 |
Q |
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| T |
30707465 |
ccacgttttttcagaagctaaaaaagttagcttctttattttcacgtttgtcttgccttgggaagcgatatttgatcctaacgtgatttcaaaatcaaat |
30707564 |
T |
|
| Q |
187 |
ctaaacaggc |
196 |
Q |
| |
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| |||||||| |
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| T |
30707565 |
ccaaacaggc |
30707574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 32743535 - 32743644
Alignment:
| Q |
87 |
ccacgttttttcaaaagctacaaaagttagcttctttgttttcannnnnnncttgccttgggaagcgatatttcatgccaccctgatttgaaaatcaaat |
186 |
Q |
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||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||| |||||| || | | | |||||| |||||||||| |
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| T |
32743535 |
ccacgttttttcagaagctaaaaaagttagcttctttattttcacgtttgtcttgccttgggaagctatatttgatcctaacgtgattttaaaatcaaat |
32743634 |
T |
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| Q |
187 |
ctaaacaggc |
196 |
Q |
| |
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| T |
32743635 |
ccaaacaggc |
32743644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 10899586 - 10899477
Alignment:
| Q |
87 |
ccacgttttttcaaaagctacaaaagttagcttctttgttttcannnnnnncttgccttgggaagcgatatttcatgccaccctgatttgaaaatcaaat |
186 |
Q |
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||||||||||||| |||||| |||||||||||||||| |||||| |||||||||||||||||||||| || | | |||||| ||||| |||| |
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| T |
10899586 |
ccacgttttttcagaagctaaaaaagttagcttctttattttcacgtttgtcttgccttgggaagcgatatttgatcctaatgtgatttcaaaattaaat |
10899487 |
T |
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| Q |
187 |
ctaaacaggc |
196 |
Q |
| |
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| |||||||| |
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| T |
10899486 |
ccaaacaggc |
10899477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2684421 - 2684375
Alignment:
| Q |
1 |
agaataaaatgtaaactgtgttggaaggttaaagatgtacccatata |
47 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
2684421 |
agaataaaatttaaactgtgttggaaagttaaagatgtacccatata |
2684375 |
T |
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