View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1319_low_69 (Length: 229)

Name: NF1319_low_69
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1319_low_69
NF1319_low_69
[»] chr7 (17 HSPs)
chr7 (17-97)||(4785894-4785974)
chr7 (17-97)||(4818894-4818974)
chr7 (21-93)||(3734658-3734730)
chr7 (17-95)||(7318333-7318411)
chr7 (17-94)||(17153115-17153192)
chr7 (17-97)||(3191020-3191100)
chr7 (19-67)||(9574495-9574543)
chr7 (21-97)||(10586989-10587065)
chr7 (17-68)||(8313353-8313404)
chr7 (17-67)||(4986643-4986693)
chr7 (17-67)||(4990741-4990791)
chr7 (27-93)||(8054457-8054526)
chr7 (17-67)||(1584320-1584370)
chr7 (17-67)||(15869683-15869733)
chr7 (39-96)||(17077187-17077247)
chr7 (17-95)||(16365765-16365842)
chr7 (28-95)||(9731600-9731666)
[»] chr2 (8 HSPs)
chr2 (17-95)||(20174596-20174674)
chr2 (17-95)||(32085523-32085601)
chr2 (19-93)||(25885423-25885497)
chr2 (17-67)||(28606139-28606189)
chr2 (17-67)||(29027584-29027634)
chr2 (17-95)||(25618616-25618692)
chr2 (55-95)||(28925581-28925621)
chr2 (55-95)||(45621880-45621920)
[»] scaffold0622 (1 HSPs)
scaffold0622 (17-95)||(788-867)
[»] scaffold0062 (1 HSPs)
scaffold0062 (17-95)||(43188-43266)
[»] chr6 (15 HSPs)
chr6 (17-95)||(22567900-22567978)
chr6 (17-95)||(28933621-28933699)
chr6 (17-95)||(12183291-12183370)
chr6 (17-94)||(4339796-4339873)
chr6 (19-68)||(11177037-11177086)
chr6 (17-97)||(21688756-21688836)
chr6 (19-95)||(21907492-21907568)
chr6 (41-97)||(23143780-23143838)
chr6 (17-94)||(8039097-8039177)
chr6 (17-88)||(8241342-8241413)
chr6 (17-67)||(6630653-6630703)
chr6 (17-67)||(9838444-9838494)
chr6 (17-97)||(15466427-15466508)
chr6 (41-97)||(22410311-22410368)
chr6 (39-98)||(23844445-23844507)
[»] chr4 (15 HSPs)
chr4 (17-97)||(19636548-19636627)
chr4 (19-87)||(5679273-5679341)
chr4 (17-95)||(12578227-12578305)
chr4 (17-95)||(19092355-19092433)
chr4 (17-68)||(14648981-14649032)
chr4 (17-67)||(17672090-17672140)
chr4 (17-67)||(17951257-17951307)
chr4 (17-67)||(17955109-17955159)
chr4 (17-62)||(22175924-22175969)
chr4 (21-68)||(19929640-19929687)
chr4 (17-94)||(17337098-17337173)
chr4 (28-97)||(11490590-11490659)
chr4 (17-95)||(22357493-22357571)
chr4 (41-94)||(8969707-8969760)
chr4 (55-95)||(13908914-13908954)
[»] chr8 (7 HSPs)
chr8 (17-94)||(14528210-14528287)
chr8 (17-91)||(34497179-34497254)
chr8 (17-67)||(25182389-25182439)
chr8 (17-95)||(30806453-30806531)
chr8 (17-67)||(13697943-13697993)
chr8 (17-97)||(19786789-19786869)
chr8 (19-71)||(26394646-26394697)
[»] chr5 (9 HSPs)
chr5 (22-95)||(18208215-18208288)
chr5 (22-97)||(18937805-18937879)
chr5 (17-64)||(19283816-19283863)
chr5 (20-94)||(24662140-24662214)
chr5 (17-93)||(15690839-15690914)
chr5 (19-95)||(24266917-24266994)
chr5 (19-95)||(24343548-24343625)
chr5 (17-49)||(22755627-22755659)
chr5 (17-95)||(34487697-34487776)
[»] chr3 (10 HSPs)
chr3 (17-93)||(21325402-21325479)
chr3 (17-97)||(8319097-8319177)
chr3 (17-67)||(21303315-21303365)
chr3 (44-97)||(3116407-3116460)
chr3 (17-95)||(12805851-12805929)
chr3 (19-72)||(2723798-2723851)
chr3 (17-91)||(2167579-2167652)
chr3 (19-92)||(17155855-17155928)
chr3 (17-96)||(41508426-41508504)
chr3 (55-95)||(17438430-17438470)
[»] scaffold0427 (1 HSPs)
scaffold0427 (17-93)||(2778-2855)
[»] chr1 (13 HSPs)
chr1 (17-93)||(33190739-33190815)
chr1 (17-68)||(28008192-28008243)
chr1 (17-67)||(24281365-24281415)
chr1 (20-63)||(22664298-22664341)
chr1 (19-65)||(18100976-18101022)
chr1 (22-67)||(24214632-24214677)
chr1 (39-95)||(25405610-25405669)
chr1 (28-90)||(16179072-16179137)
chr1 (17-67)||(147719-147768)
chr1 (39-95)||(12208661-12208720)
chr1 (21-95)||(13345302-13345375)
chr1 (17-94)||(17359223-17359297)
chr1 (55-95)||(17610255-17610295)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-68)||(168260-168311)
[»] scaffold0008 (1 HSPs)
scaffold0008 (17-67)||(54949-54999)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-66)||(39674-39723)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 4785974 - 4785894
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4785974 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacgtgaagtgcttggacgaaacgacaatccct 4785894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 4818974 - 4818894
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4818974 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacgtgaagtgcttggacgaaacgacaatccct 4818894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 3734730 - 3734658
Alignment:
Q  21 taacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaat 93  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||| || |||||| |||| |||||    
T  3734730 taacccttaactcttttattttatatcgtcaacttaaaataagtaacgtgaattgtttggaccaaacaacaat 3734658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 7318411 - 7318333
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||   ||  || || ||||||||||||||||    
T  7318411 tctctaacccttatctcttttattttatatcgtcaacttaaaataagtaatgcgagctgtttagacgaaacgacaatcc 7318333  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 17153115 - 17153192
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatc 94  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||||||||  ||  || || |||||||||||||||    
T  17153115 tctctaacccttatctcttttattttatgtcgtcaacttaaaataagtaacgcgagctgtttagacgaaacgacaatc 17153192  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 3191020 - 3191100
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    ||||||||||  ||| ||||| ||||||||| |||||| ||||||| ||||| ||| || |||||||||||||||||||||    
T  3191020 tctctaacccaaaacccttttgttttatatcctcaacttaaaataaataacacgaattgtttggacgaaacgacaatccct 3191100  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 9574543 - 9574495
Alignment:
Q  19 tctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  9574543 tctaacccttaactcttttattttatatcgtcaacttaaaataaataac 9574495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 10586989 - 10587065
Alignment:
Q  21 taacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    |||||||||  ||||||||||||||| || |||| ||||||||||||||||  || || ||||||||||||||||||    
T  10586989 taacccttatttcttttattttatattgtaaacttaaaataagtaacatgagttgtttagacgaaacgacaatccct 10587065  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 8313353 - 8313404
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaaca 68  Q
    ||||||||||||||||||||||||||||| | |||||| |||||||||||||    
T  8313353 tctctaacccttaactcttttattttataccttcaacttaaaataagtaaca 8313404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 4986693 - 4986643
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  4986693 tctctaacccttaacacttttattttttatcgtcaacttaaaataagtaac 4986643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 4990791 - 4990741
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  4990791 tctctaacccttaacacttttattttttatcgtcaacttaaaataagtaac 4990741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 8054457 - 8054526
Alignment:
Q  27 ttaactcttttattttatatcgtcaact---aaaaataagtaacatgaagtgcttggacgaaacgacaat 93  Q
    ||||||||| | ||||||||||||||||   |||||||||||||| ||| || |||||||||||||||||    
T  8054457 ttaactcttatcttttatatcgtcaacttacaaaaataagtaacaagaattgtttggacgaaacgacaat 8054526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 1584370 - 1584320
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||| ||||||||||||||||||||||||||   ||||||||||||    
T  1584370 tctctaacctttaactcttttattttatatcgtcaaaacaaaataagtaac 1584320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 15869733 - 15869683
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    |||| |||||||| || ||||||||||||||||||||| ||||||||||||    
T  15869733 tctcaaacccttatctattttattttatatcgtcaacttaaaataagtaac 15869683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 17077247 - 17077187
Alignment:
Q  39 ttttatatcgtcaact---aaaaataagtaacatgaagtgcttggacgaaacgacaatccc 96  Q
    ||||||| ||||||||   |||||||||||||||||| || ||||||||||||||||||||    
T  17077247 ttttataccgtcaacttacaaaaataagtaacatgaattgtttggacgaaacgacaatccc 17077187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 16365842 - 16365765
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaac-taaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||| ||||||||||||||  ||||||||||||| ||||||||||||||  ||| || ||| || ||||||||||||    
T  16365842 tctctaaaccttaactctttta--ttatatcgtcaacttaaaaataagtaacgcgaattgtttgcacaaaacgacaatcc 16365765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 9731600 - 9731666
Alignment:
Q  28 taactcttttattttatatcgtcaa-ctaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||||||||||||  | |||| |||||||||||||||  ||| || |||||||||||||||||||    
T  9731600 taactcttttattttat--catcaaactaaaaataagtaacgcgaattgtttggacgaaacgacaatcc 9731666  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 20174596 - 20174674
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||    
T  20174596 tctctaacccttaactattttattttatatcatcaacttaaaataagtaacatgaattgtttggacgaaacgacaatcc 20174674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 32085601 - 32085523
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||  || || ||||||||||||||||    
T  32085601 tctctaactcttaactcttttattttatatcgtcaacttaaaataagtaacacgagctgtttagacgaaacgacaatcc 32085523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 25885423 - 25885497
Alignment:
Q  19 tctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaat 93  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||  || || |||||||||||||||||    
T  25885423 tctaacccttaactcttttattttatatcgtcggaataaaataagtaacacaaattgtttggacgaaacgacaat 25885497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 28606139 - 28606189
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||||||  |||||||||| ||||||||||||| ||||||||||||    
T  28606139 tctctaacccttgtctcttttattatatatcgtcaacttaaaataagtaac 28606189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 29027634 - 29027584
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||||||| ||||||||||| |||||| ||||| ||||||||||||    
T  29027634 tctctaacccttatctcttttatttaatatcggcaacttaaaataagtaac 29027584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 25618692 - 25618616
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||  || |||||||||||  |||||||||||||||||||||| ||  ||| || || ||||||||||||||||    
T  25618692 tctctaacttttcactcttttatt--atatcgtcaactaaaaataagttacgcgaattgtttagacgaaacgacaatcc 25618616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 28925621 - 28925581
Alignment:
Q  55 aaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||| ||||||||| || |||||||||||||||||||    
T  28925621 aaaaataaataacatgaattgtttggacgaaacgacaatcc 28925581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 45621880 - 45621920
Alignment:
Q  55 aaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||||||||| ||| || |||||||||||||||||||    
T  45621880 aaaaataagtaacacgaattgtttggacgaaacgacaatcc 45621920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 867 - 788
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacat-gaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||| | | | || |||||||||||||||||||    
T  867 tctctaacccttaactcttttattttatatcttcaacttaaaataagtaacgtcggattgtttggacgaaacgacaatcc 788  T

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Target: scaffold0062 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 43188 - 43266
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||||||| ||  || || ||||||||||||||||    
T  43188 tctctaacccttatctcttttattttatatcgtcaatttaaaataagtaacacgagctgtttagacgaaacgacaatcc 43266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 22567978 - 22567900
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||||| |||  || ||||||||||| |||||||    
T  22567978 tctctaacccttaacccttttattttatatcgttaacttaaaataagtaacgtgagttgtttggacgaaaccacaatcc 22567900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 28933621 - 28933699
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||| ||||||||||||||||| |||||| |||||||| ||||  || || ||||||||||||| |||||    
T  28933621 tctctaacccttatctcttttattttatatcatcaacttaaaataagcaacacaaattgtttggacgaaacgataatcc 28933699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 12183291 - 12183370
Alignment:
Q  17 tctctaacccttaa-ctcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||| |||| ||||||||||||||||||||| || |||||||||||| |||| || | |||||||| ||||||||    
T  12183291 tctctaacctttaaactcttttattttatatcgtcaccttaaaataagtaacgtgaattgttaggacgaaatgacaatcc 12183370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 4339873 - 4339796
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatc 94  Q
    ||||||||||||| ||||||||||||||||||||||   |||||||||||   ||| || |||||| |||||||||||    
T  4339873 tctctaacccttatctcttttattttatatcgtcaaactaaaataagtaatgcgaattggttggacaaaacgacaatc 4339796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 11177086 - 11177037
Alignment:
Q  19 tctaacccttaactcttttattttatatcgtcaactaaaaataagtaaca 68  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  11177086 tctaacccttatctcttttattttatatcgtcaatttaaaataagtaaca 11177037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 21688756 - 21688836
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    |||||||||  |||||||||||||||||||| |||||| ||||||||||||  ||| |  ||||| | |||||||||||||    
T  21688756 tctctaacctctaactcttttattttatatcttcaactcaaaataagtaacgcgaattttttggatgtaacgacaatccct 21688836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 21907568 - 21907492
Alignment:
Q  19 tctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||| ||||||||||||||||| |||||| ||| ||||||||  ||  |  |||||||||||||||||||    
T  21907568 tctaacccttatctcttttattttatatcatcaacttaaattaagtaacgcgacttttttggacgaaacgacaatcc 21907492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 23143838 - 23143780
Alignment:
Q  41 ttatatcgtcaactaa--aaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    |||||||||||||| |  |||||||||||||||| || |||||||||||||||||||||    
T  23143838 ttatatcgtcaacttacaaaataagtaacatgaattgtttggacgaaacgacaatccct 23143780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 8039097 - 8039177
Alignment:
Q  17 tctctaacccttaactcttttatt----ttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatc 94  Q
    ||||||||||||||||||||||||    ||||||||||||   ||||||||||||| ||| || ||||| ||||||||||||    
T  8039097 tctctaacccttaactcttttattattattatatcgtcaa-acaaaataagtaacacgaattgtttggatgaaacgacaatc 8039177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 8241413 - 8241342
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacg 88  Q
    |||||||| |||||||||||||||||||||||| ||   |||||||||||  |||| || |||||| |||||    
T  8241413 tctctaactcttaactcttttattttatatcgtgaaactaaaataagtaatgtgaattgtttggacaaaacg 8241342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 6630653 - 6630703
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||| |||  ||||||||||||||| ||||||| ||||||||||||    
T  6630653 tctctaacctttatatcttttattttatattgtcaacttaaaataagtaac 6630703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 9838494 - 9838444
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    |||||||| ||| |||||||||||||||||||||||   ||||||||||||    
T  9838494 tctctaacgcttcactcttttattttatatcgtcaaactaaaataagtaac 9838444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 15466508 - 15466427
Alignment:
Q  17 tctctaacccttaactcttttatt-ttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    |||||||||||||||||||||||| ||||||||| ||   ||||||| ||||  ||| || || ||||||| ||||||||||    
T  15466508 tctctaacccttaactcttttattattatatcgttaaaacaaaataactaacgcgaattgtttagacgaaatgacaatccct 15466427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 22410311 - 22410368
Alignment:
Q  41 ttatatcgtcaact-aaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    |||||||||||||| ||||||||||||| |||| || ||| | |||||||||||||||    
T  22410311 ttatatcgtcaacttaaaaataagtaacgtgaattgtttgaatgaaacgacaatccct 22410368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 23844445 - 23844507
Alignment:
Q  39 ttttatatcgtcaact---aaaaataagtaacatgaagtgcttggacgaaacgacaatccctt 98  Q
    ||||||||||||||||   |||||||||||||  ||  || ||||||||||||||||||||||    
T  23844445 ttttatatcgtcaacttacaaaaataagtaacgcgagttgtttggacgaaacgacaatccctt 23844507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 19636548 - 19636627
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaa-ctaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    ||||||||||||||||||||||||||||  |||||| || ||||||||||||||||| || ||||| |||||||||||||||    
T  19636548 tctctaacccttaactcttttattttat--cgtcaaacttaaaataagtaacatgaattgtttggatgaaacgacaatccct 19636627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 5679341 - 5679273
Alignment:
Q  19 tctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaac 87  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||  ||| || |||||||||||    
T  5679341 tctaacccttaactcttttattttatatcgttaacttaaaataagtaacgcgaattgtttggacgaaac 5679273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 12578227 - 12578305
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||| |||   || || |||||| ||||||||||||    
T  12578227 tctctaaccctttactcttttattttatatcgtcaacttaaaataagaaacgcaaattgtttggacaaaacgacaatcc 12578305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 19092433 - 19092355
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||| |||| ||||||||||| |||||||||||| |||||||| ||| |||  || |||||||||||||||||||    
T  19092433 tctctaactcttatctcttttatttaatatcgtcaacttaaaataagcaacgtgagttgtttggacgaaacgacaatcc 19092355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 14649032 - 14648981
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaaca 68  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  14649032 tctctaacccttatgtcttttattttatatcgtcaacttaaaataagtaaca 14648981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 17672140 - 17672090
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  17672140 tctctaacctttaactcttttattttatatcgttaacttaaaataagtaac 17672090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 17951257 - 17951307
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  17951257 tctctaacccgtcactcttttattttatatcgtcaacttaaaataagtaac 17951307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 17955109 - 17955159
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  17955109 tctctaacccatcactcttttattttatatcgtcaacttaaaataagtaac 17955159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 22175924 - 22175969
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataa 62  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||    
T  22175924 tctctaacccttaactcttttattttatatcatcaactcaaaataa 22175969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 19929640 - 19929687
Alignment:
Q  21 taacccttaactcttttattttatatcgtcaactaaaaataagtaaca 68  Q
    ||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  19929640 taacccttatctcttttattttatattgtcaacttaaaataagtaaca 19929687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 17337098 - 17337173
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatc 94  Q
    |||| ||||||| |||||||||||  |||||||||||||||||||||||||   || || |||||||||| |||||||    
T  17337098 tctcaaaccctttactcttttatt--atatcgtcaactaaaaataagtaacgcaaattgtttggacgaaatgacaatc 17337173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 11490659 - 11490590
Alignment:
Q  28 taactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    |||||||||||||||||||||||||   ||||||||||||  ||| || ||||| ||||| |||||||||    
T  11490659 taactcttttattttatatcgtcaaactaaaataagtaacgcgaattgtttggaagaaactacaatccct 11490590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 22357493 - 22357571
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||| |||| ||||| | ||||||||||||||||  |||||||||||| ||| || ||  | |||||||||||||    
T  22357493 tctctaactcttatctcttattttttatatcgtcaactttaaataagtaacacgaactgtttaaatgaaacgacaatcc 22357571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 8969707 - 8969760
Alignment:
Q  41 ttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatc 94  Q
    ||||||||||||   ||||||||||||| ||| || ||||||||||||||||||    
T  8969707 ttatatcgtcaaaacaaaataagtaacacgaattgtttggacgaaacgacaatc 8969760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 13908954 - 13908914
Alignment:
Q  55 aaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||||||||| ||| || |||||||||||||||||||    
T  13908954 aaaaataagtaacacgaattgtttggacgaaacgacaatcc 13908914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 14528287 - 14528210
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatc 94  Q
    |||||||||||||||| ||||||||||||||||||  | |||||||||||| |||  || ||||||||||||||||||    
T  14528287 tctctaacccttaactattttattttatatcgtcagtttaaaataagtaacgtgagttgtttggacgaaacgacaatc 14528210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 34497254 - 34497179
Alignment:
Q  17 tctctaaccctt-aactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgaca 91  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||||||| || | || |||||||||||||||    
T  34497254 tctctaaccctttaactcttttattttatatcgtcaatttaaaataagtaacgtggattgtttggacgaaacgaca 34497179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 25182389 - 25182439
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  25182389 tctctaacccttatctcttttattttatatcgtcaacttaaaataagtaac 25182439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 30806453 - 30806531
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||   || || ||||| |||||||||||||    
T  30806453 tctctaacccttaactcttttattttatatcgtcaaactaaaataagtaacgcaaattgtttggatgaaacgacaatcc 30806531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 13697993 - 13697943
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  13697993 tctctaacccttatctcttgtattttatatcgtcaacttaaaataagtaac 13697943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 19786869 - 19786789
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    ||||||||  ||| ||||||||||||||||| |||||| |||| |||||||| ||  || ||||||||||||||| |||||    
T  19786869 tctctaacttttatctcttttattttatatcatcaacttaaaacaagtaacacgagttgtttggacgaaacgacagtccct 19786789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 26394646 - 26394697
Alignment:
Q  19 tctaacccttaactcttttattttatatcgtcaac-taaaaataagtaacatga 71  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  26394646 tctaacccttaactctttta--ttatatcgtcaacttaaaaataagtaacatga 26394697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 18208215 - 18208288
Alignment:
Q  22 aacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||||||||||||||||||||| ||||   ||||||||||||||||| || |||||||||| ||||||||    
T  18208215 aacccttaactcttttattttatatcatcaaaacaaaataagtaacatgaattgtttggacgaaaggacaatcc 18208288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 18937879 - 18937805
Alignment:
Q  22 aacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    ||||||||||||||| |||||||||| | |||| |||||||||||| |||| || ||||||||||| |||||||||    
T  18937879 aacccttaactcttt-attttatatcattaacttaaaataagtaacgtgaattgtttggacgaaacaacaatccct 18937805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 19283816 - 19283863
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagt 64  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  19283816 tctctaacccttaactcttttactttatatcgtcaacttaaaataagt 19283863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 24662140 - 24662214
Alignment:
Q  20 ctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatc 94  Q
    |||||||||||||||||||||||||||||| ||   |||||||||||| |||| || || | |||||| ||||||    
T  24662140 ctaacccttaactcttttattttatatcgttaaactaaaataagtaacgtgaattgtttaggcgaaacaacaatc 24662214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 15690914 - 15690839
Alignment:
Q  17 tctctaaccctt-aactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaat 93  Q
    |||||||||||| ||||||||||||| || | ||||||||||||||||||||  ||| || |||||||||||||||||    
T  15690914 tctctaaccctttaactcttttattt-attt-gtcaactaaaaataagtaacgagaattggttggacgaaacgacaat 15690839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 24266917 - 24266994
Alignment:
Q  19 tctaacccttaactcttttatt-ttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||||||||||||||||| ||||||||||||   ||||||||||||| ||| || |||||| ||| || |||||    
T  24266917 tctaacccttaactcttttattattatatcgtcaaaacaaaataagtaacacgaattgtttggacaaaatgataatcc 24266994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 24343548 - 24343625
Alignment:
Q  19 tctaacccttaactcttttatt-ttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||||||||||||||||| ||||||||||||   ||||||||||||| ||| || |||||| ||| || |||||    
T  24343548 tctaacccttaactcttttattattatatcgtcaaaacaaaataagtaacacgaattgtttggacaaaatgataatcc 24343625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 22755659 - 22755627
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgt 49  Q
    |||||||||||||||||||||||||||||||||    
T  22755659 tctctaacccttaactcttttattttatatcgt 22755627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 34487776 - 34487697
Alignment:
Q  17 tctctaacccttaactcttttatt-ttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||| || ||||||| ||||||||||||   ||||||||||||  ||| || || ||||||||||||||||    
T  34487776 tctctaacccttatcttttttattattatatcgtcaaaacaaaataagtaacgcgaattgtttagacgaaacgacaatcc 34487697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 21325479 - 21325402
Alignment:
Q  17 tctctaaccctt-aactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaat 93  Q
    |||||||||||| ||||||||||||||||||||| |||| |||||||||||||  || || |||||||||||||||||    
T  21325479 tctctaacccttcaactcttttattttatatcgttaacttaaaataagtaacacaaattgtttggacgaaacgacaat 21325402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 8319177 - 8319097
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    |||||||| |||| ||||| ||||||||||| |||||| ||||||||||||||||| || ||| ||||||||| |||||||    
T  8319177 tctctaactcttatctcttgtattttatatcatcaacttaaaataagtaacatgaattgtttgtacgaaacgataatccct 8319097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 21303315 - 21303365
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    |||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  21303315 tctctaaccctttactcttttattttatatagtcaacttaaaataagtaac 21303365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 3116407 - 3116460
Alignment:
Q  44 tatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatccct 97  Q
    ||||||||||| |||||||||||| |||| || |||||||||||||||||||||    
T  3116407 tatcgtcaacttaaaataagtaacgtgaattgtttggacgaaacgacaatccct 3116460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 12805851 - 12805929
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    |||||||||||| | |||||||||||||| |||| ||| ||||||||||||   || || ||||| |||||||||||||    
T  12805851 tctctaaccctttaatcttttattttataacgtcgacttaaaataagtaacgcaaattgtttggatgaaacgacaatcc 12805929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 2723798 - 2723851
Alignment:
Q  19 tctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaa 72  Q
    ||||||||||||||| ||||||||||||| ||||   |||||||||||||||||    
T  2723798 tctaacccttaactcatttattttatatcatcaaactaaaataagtaacatgaa 2723851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 2167579 - 2167652
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaa-ctaaaaataagtaacatgaagtgcttggacgaaacgaca 91  Q
    ||||||||| || ||||||||||||||||  ||||| ||||||||||||||  |||| || |||||||||||||||    
T  2167579 tctctaaccatttactcttttattttata--gtcaaactaaaaataagtaatgtgaattgtttggacgaaacgaca 2167652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 17155928 - 17155855
Alignment:
Q  19 tctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaa 92  Q
    |||||||| |||||||||| ||||||||||| ||   ||||||||||||||| | || ||| ||||||| ||||    
T  17155928 tctaacccgtaactctttttttttatatcgttaaactaaaataagtaacatggattgtttgaacgaaacaacaa 17155855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 41508504 - 41508426
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtc-aactaaaaataagtaacatgaagtgcttggacgaaacgacaatccc 96  Q
    |||||||||||||||||||||||||  ||||||| || |||||||||||||    || || |||||| |||||||||||||    
T  41508504 tctctaacccttaactcttttattt--tatcgtcaaattaaaaataagtaatgcaaattgtttggactaaacgacaatccc 41508426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 17438430 - 17438470
Alignment:
Q  55 aaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||| |||| || |||||||||||||||||||    
T  17438430 aaaaataagtaacgtgaattgtttggacgaaacgacaatcc 17438470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 2778 - 2855
Alignment:
Q  17 tctctaacccttaactcttttatt-ttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaat 93  Q
    |||||||||||||||||||||||| |||||| |||||   ||||||||||||| ||| || |||||||||||||||||    
T  2778 tctctaacccttaactcttttattattatattgtcaaaacaaaataagtaacacgaattgtttggacgaaacgacaat 2855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 33190815 - 33190739
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaacatgaagtgcttggacgaaacgacaat 93  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||  || || || |||||||||||    
T  33190815 tctctaaaccttaactattttattttatatcgtcaacttaaaataagtaacacgagttgtttagatgaaacgacaat 33190739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 28008243 - 28008192
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaaca 68  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  28008243 tctctaatcctttactcttttattttatatcgtcaacttaaaataagtaaca 28008192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 24281415 - 24281365
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    |||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  24281415 tctctaaccctttactcttttattttatattgtcaacttaaaataagtaac 24281365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 22664341 - 22664298
Alignment:
Q  20 ctaacccttaactcttttattttatatcgtcaactaaaaataag 63  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    
T  22664341 ctaacccttatctcttttattttatatcgtcaacttaaaataag 22664298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 18100976 - 18101022
Alignment:
Q  19 tctaacccttaactcttttattttatatcgtcaactaaaaataagta 65  Q
    ||||||||||||||||| |||||||||||||||| | ||||||||||    
T  18100976 tctaacccttaactcttctattttatatcgtcaaattaaaataagta 18101022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 24214677 - 24214632
Alignment:
Q  22 aacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  24214677 aacccttaattcttttattttatatcgtccacttaaaataagtaac 24214632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 25405610 - 25405669
Alignment:
Q  39 ttttatatcgtcaact---aaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||||||   ||||||||||||| |||| || |||||||||||||||||||    
T  25405610 ttttatatcgtcaacttacaaaaataagtaacgtgaactgtttggacgaaacgacaatcc 25405669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 16179137 - 16179072
Alignment:
Q  28 taactcttttattttatatcgtcaact---aaaaataagtaacatgaagtgcttggacgaaacgac 90  Q
    |||| ||| ||||||||||||||||||   |||||||||||||| ||| || ||||||||||||||    
T  16179137 taacccttatattttatatcgtcaacttacaaaaataagtaacaagaattgtttggacgaaacgac 16179072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 147768 - 147719
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||||||| |||||||| ||||||||||||| | ||||||||||||    
T  147768 tctctaacccttatctctttta-tttatatcgtcaaattaaaataagtaac 147719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 12208720 - 12208661
Alignment:
Q  39 ttttatatcgtcaact---aaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||||||   |||||||||||||  ||| || |||||||||||||||||||    
T  12208720 ttttatatcgtcaacttacaaaaataagtaacgcgaattgtttggacgaaacgacaatcc 12208661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 13345302 - 13345375
Alignment:
Q  21 taacccttaactcttttattttatatcgtcaa-ctaaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||| ||||||||||||||||||  |||||| ||| |||||||||||  ||| || |||||| ||||||||||||    
T  13345302 taacctttaactcttttattttat--cgtcaaactataaataagtaacgcgaattgtttggacaaaacgacaatcc 13345375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 17359297 - 17359223
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaac-taaaaataagtaacatgaagtgcttggacgaaacgacaatc 94  Q
    |||||||||||||  |||||||||  ||||||||||| ||||||||||||||  ||| |  ||||||||||||||||||    
T  17359297 tctctaaccctta--tcttttatt--atatcgtcaacctaaaaataagtaacgagaattatttggacgaaacgacaatc 17359223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 17610255 - 17610295
Alignment:
Q  55 aaaaataagtaacatgaagtgcttggacgaaacgacaatcc 95  Q
    ||||||||||||| |||| || |||||||||||||||||||    
T  17610255 aaaaataagtaacgtgaattgtttggacgaaacgacaatcc 17610295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 168260 - 168311
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaaca 68  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  168260 tctctaacccttatgtcttttattttatatcgtcaacttaaaataagtaaca 168311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 54999 - 54949
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaac 67  Q
    ||||||||||||| || |||||||||||||||| |||| ||||||||||||    
T  54999 tctctaacccttatcttttttattttatatcgttaacttaaaataagtaac 54949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 39723 - 39674
Alignment:
Q  17 tctctaacccttaactcttttattttatatcgtcaactaaaaataagtaa 66  Q
    |||||||  |||| |||||||||||||||||||||||| |||||||||||    
T  39723 tctctaattcttatctcttttattttatatcgtcaacttaaaataagtaa 39674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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