View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1319_low_8 (Length: 536)
Name: NF1319_low_8
Description: NF1319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1319_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 31 - 525
Target Start/End: Original strand, 4720638 - 4721135
Alignment:
| Q |
31 |
aaaaactaaggtcttgagaattttaattttaagaccatattatcttacttctacaaattttttgatgataaaatttagattgaagaaatggtgtttt--- |
127 |
Q |
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| T |
4720638 |
aaaaactaaggtcttgagaattttaattttaagaccatattatcttacttctacaaaatttttgatgataaaatttagattgaagaaatggtgttttagt |
4720737 |
T |
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| Q |
128 |
ctaaagcatggaagacattcgaatcccacttctacaatttcatactaaatcagtgattatcaacgagatatatatttcatagtgataattatcactattg |
227 |
Q |
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| T |
4720738 |
ctaaagcatggaaaacatttgaatcctacttctacaatttcatactaaatcagtgattatcaacgaaatatatatttcatagtgataattatcactattg |
4720837 |
T |
|
| Q |
228 |
ttaaaagtgtatggcaaacttaatttgctaatatatggaccacaaatattagatttgaggttacctagtttttgattcgtagggtccattattggagaag |
327 |
Q |
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| T |
4720838 |
ttaaaagtgtatggcaaacttaatttgctaatatatggaccacaaatattatatttgaggttacctagtttttgattcgtagggtccattattggagaag |
4720937 |
T |
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| Q |
328 |
ttttgatcaatcttatattcttccatgtgtatagtttctatagttaattagtaagtgcactaaaccaaactgcgcatgcttgctcttgatgtatacgtca |
427 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
4720938 |
ttttgatcaatcctatattcttccatgtgtatagtttctatagttaattagtaagtgcactaaacccacctgcgcatgcttgctcttgatgtatacgtca |
4721037 |
T |
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| Q |
428 |
attgcaggttgaacagcaaagatgaagatttggcaatcatatcctttttaataaaaacaatgttcctagagatagaggcagcgattttatgatttcat |
525 |
Q |
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| T |
4721038 |
attgcaggttgaacagcaaagatgaagatttggcaatcatatcctttttaataaaaacaatgttcctagagatagaggcagcgattttatgatttcat |
4721135 |
T |
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