View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_1 (Length: 865)
Name: NF13200_high_1
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 38101270 - 38100850
Alignment:
| Q |
18 |
gtgggctggtcataacattcaaagatttgattgtgttcgtatcaaagaggcttttgatgatatcaataggccagcacctgtaccagttggaatcatcgat |
117 |
Q |
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| T |
38101270 |
gtgggctggtcataacattcaaagatttgattgtgttcgtatcaaagaggcttttgatggtatcaataggccagcacctgtaccagttggaatcatcgat |
38101171 |
T |
|
| Q |
118 |
tctttaggggtcctaactgagaaatttggaagaagagctggtaatatgaaggtatgtcaagtatcaagaatatatagaagcaagtgattcataattc-tc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38101170 |
tctttaggggtcctaactgagaaatttggaagaagagctggtaatatgaaggtatgtcaagtatcaagaatatatagaagcaagtgattcataattcctc |
38101071 |
T |
|
| Q |
217 |
acaatttcaagttcttaacactattatatttatgggcagatggcaacattggcttcttattttggcttggggcaacaaaaacacaggtatcgttgcgttt |
316 |
Q |
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| T |
38101070 |
acaatttcaagttcttaacactattatatttatgggcagatggcaacattggcttcttattttggcttggggcaacaaaaacacaggtatcgttgcgttt |
38100971 |
T |
|
| Q |
317 |
cgataaacaatttaattaagaatctaataaataattaagttcttatcgtataacaacgctatgaatgaacttattaaacaagtacttataaaaataaatc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38100970 |
cgataaacaatttaattaagaatctaataaataattaagttcttatcgtataacaacgctatgaatgaactttttaaacaagtacttataaaaataaatc |
38100871 |
T |
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| Q |
417 |
gaggaaggagaaaattattac |
437 |
Q |
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| T |
38100870 |
gaggaaggagaaaattattac |
38100850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 457 - 851
Target Start/End: Original strand, 25960663 - 25961057
Alignment:
| Q |
457 |
tggtgattacaaaggatagatatacctagaattgaaaacaaagccagcaagaccacctattttaagcatagaatctctccacttcaaaattttatctttt |
556 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25960663 |
tggtgattacaaaatatagatatacctagaattgaaaacaaagccagcaagaccacctattttaagcatagagtctctccacttcaaaattttatctttt |
25960762 |
T |
|
| Q |
557 |
tcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgttttctgacatgagatggatcaaccttatagaaaacaggaataa |
656 |
Q |
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| T |
25960763 |
tcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgtttcctgacatgagatggatcaaccttatagaaaacaggaataa |
25960862 |
T |
|
| Q |
657 |
taagcctttgaagatcacaaatcctgttgagttcatcaagacaccaatgagaatcagcatagttaggtgaaatgataacaatggaagcagcagagtcatc |
756 |
Q |
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| T |
25960863 |
taagcctttcaagatcacaaatcctgttgagttcatcaagacaccaatgagaatcagcatagttaggtgaaatgataacaatggaagcagcagagtcatc |
25960962 |
T |
|
| Q |
757 |
aatggcttcaagaagagtggtagctatgtggtccccacggtccaaaccctcatcatccatgaaagcacgaacaccttgtttgtgaagtgattcat |
851 |
Q |
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| T |
25960963 |
aatggcttcaagaagagtggtagctatgtggtccccacggtccaaaccctcatcatccatgaaagcacgaacaccttgtttgtgaagtgattcat |
25961057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 457 - 851
Target Start/End: Original strand, 25951412 - 25951806
Alignment:
| Q |
457 |
tggtgattacaaaggatagatatacctagaattgaaaacaaagccagcaagaccacctattttaagcatagaatctctccacttcaaaattttatctttt |
556 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25951412 |
tggtgattacaaaatatagatatacctagaattgaaaacaaagccagcaagaccacctattttaagcatagagtctctccacttcaaaattttatctttt |
25951511 |
T |
|
| Q |
557 |
tcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgttttctgacatgagatggatcaaccttatagaaaacaggaataa |
656 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25951512 |
tcatttgcaaacctcttttcaagataattaaacccatcttgaaaaggacccaattgtttcctgacatgagatggatcaaccttatagaaaacaggaataa |
25951611 |
T |
|
| Q |
657 |
taagcctttgaagatcacaaatcctgttgagttcatcaagacaccaatgagaatcagcatagttaggtgaaatgataacaatggaagcagcagagtcatc |
756 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25951612 |
taagcctttcaagatcacaaatcctgttgagttcatcaagacaccaatgagaatcagcatagttaggtgaaatgataacaatggaagcagcagagtcatc |
25951711 |
T |
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| Q |
757 |
aatggcttcaagaagagtggtagctatgtggtccccacggtccaaaccctcatcatccatgaaagcacgaacaccttgtttgtgaagtgattcat |
851 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
25951712 |
aatggcttcaagaagagtggtagctatgtggtccccacggtccaaaccctcatcatccatgaaagcacgaacaccttgtttgtgtaatgattcat |
25951806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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