View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_10 (Length: 495)
Name: NF13200_high_10
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 30362909 - 30362452
Alignment:
| Q |
1 |
tcaatttccttatgatcatttcctttgtttcaatctttagctattttgtaaacattgattgaactttttatgtaaaggtttatgttcgtgacacaccaaa |
100 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30362909 |
tcaatttccttacgatcatttcctttatttcaatctttagctattttgtaaacattgattgaactttttatgtaaaggtttatgttcgtgacacaccaaa |
30362810 |
T |
|
| Q |
101 |
aacaccagcagcaccatttaaatcaatggcagaaatgatgaagaaatttgagtctagtacgagagacctgccactgcccaacactctttcccatgtaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30362809 |
aacaccagcagcaccatttaaatcaatggcagaaatgatgaagaaatttgagtctagtacgagagacctgccactgcccaacactctttcccatgtaatg |
30362710 |
T |
|
| Q |
201 |
atcaatcaca------ttcactgttttacctttttgttgcaccttggggtgtttaagtactttttgactaattatttgtaatgatacttccttgatacag |
294 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30362709 |
atcaatcacaatcacattcactgttttacctttttgttgcaccttggggtgtttaagtactttttgactaattatttgtaattatacttccttgatacag |
30362610 |
T |
|
| Q |
295 |
tcaaaaccgaaactaacattgaccaagcctaagtcacctgaatttgagacaaatcagcgggttcgccctgctagagtgaagagcgctgctgagcttgagg |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30362609 |
acaaaaccgaaactaacattgaccaagcctaagtcacctgaatttgagacaaatcagcgggttcgccctgctagagtgaagagcgctgctgagcttgagg |
30362510 |
T |
|
| Q |
395 |
aagaaatgatggctaaaatgccaaaattcaaggctcgaacactaaataagaaggtatg |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30362509 |
aagaaatgatggctaaaatgccaaaattcaaggctcgaacactaaataagaaggtatg |
30362452 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 24466382 - 24466330
Alignment:
| Q |
54 |
attgattgaactttttatgtaaaggtttatgttcgtgacacaccaaaaacacca |
107 |
Q |
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||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |
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| T |
24466382 |
attgattgaacttct-atgtgaaggtttatgttcgtgacacaccaaaaacacca |
24466330 |
T |
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