View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13200_high_12 (Length: 437)

Name: NF13200_high_12
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13200_high_12
NF13200_high_12
[»] chr3 (15 HSPs)
chr3 (210-349)||(6791209-6791348)
chr3 (218-351)||(6411446-6411579)
chr3 (1-171)||(6849109-6849280)
chr3 (30-129)||(6789464-6789563)
chr3 (1-158)||(6938400-6938556)
chr3 (2-99)||(6550333-6550429)
chr3 (2-114)||(6797236-6797345)
chr3 (90-186)||(7604597-7604695)
chr3 (1-85)||(6558857-6558940)
chr3 (1-87)||(6527528-6527613)
chr3 (210-263)||(7604412-7604465)
chr3 (18-76)||(6785703-6785761)
chr3 (131-171)||(6791028-6791068)
chr3 (30-93)||(6411174-6411237)
chr3 (218-275)||(6937774-6937831)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-167)||(12214-12380)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 210 - 349
Target Start/End: Original strand, 6791209 - 6791348
Alignment:
Q  210 ctgcagtatagttaattgaccttttgaagatttaccgcgcaacaattagtttatgaattgaaataaagttttaagtaggctattaagtcattgaattcaa 309  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||  |||||||||||||| ||| ||||| | |||||||||||||||||||||||||    
T  6791209 ctgcagtatagttaattgatcttttgaagatttaccacgcaacaatctgtttatgaattgaagtaacgtttttaataggctattaagtcattgaattcaa 6791308  T
Q  310 caatttatgtgaaatgaatgtgttttgtctaatgcactca 349  Q
    ||||||||||| |||||||||||||||| |||| ||||||    
T  6791309 caatttatgtggaatgaatgtgttttgtataatacactca 6791348  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 6411446 - 6411579
Alignment:
Q  218 tagttaattgaccttttgaagatttaccgcgcaacaattagtttatgaattgaaataaagttttaagtaggctattaagtcattgaattcaacaatttat 317  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||| ||||| | |||||||||||||| |  |||| ||| ||||||    
T  6411446 tagttaattgaccttttgaagatttaccatgcaacaatcagtttatgaattgaaataacgtttttattaggctattaagtcgtcaaatttaacgatttat 6411545  T
Q  318 gtgaaatgaatgtgttttgtctaatgcactcata 351  Q
      |||||||||||||||||| ||||||| |||||    
T  6411546 aggaaatgaatgtgttttgtataatgcagtcata 6411579  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 6849109 - 6849280
Alignment:
Q  1 cttttggtaatataaatttgcttcacataatcttttccctagttttacattcaaacataactaagataacatataattatctcactgacacaaaatcttt 100  Q
    |||||||||||||||||| || |||  | ||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||| |||||| | |||    
T  6849109 cttttggtaatataaatt-gcatcatgtcatcttttccgtagttttacattcaaacatagttaagatcacatataattatctcactggcacaaatttttt 6849207  T
Q  101 atgt-aaagacatttaa-gtagagactttttatgaaatactaagaaagctatattcccacaaaggtatgatta 171  Q
    |||| |||  |  ||||  | ||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  6849208 atgtgaaatgctcttaatatcgagactttttatgaaatgctaagaaagctatattcccactaaggtatgatta 6849280  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 6789464 - 6789563
Alignment:
Q  30 atcttttccctagttttacattcaaacataactaagataacatataattatctcactgacacaaaatctttatgtaaagacatttaagtagagacttttt 129  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| | ||||||||||    
T  6789464 atcttttccctagttttacattcaaacacagctaagataacatataattatctcactggcacaaaatctttatgtaaaggcatgtaaatcgagacttttt 6789563  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 6938556 - 6938400
Alignment:
Q  1 cttttggtaatataaatttgcttcacataatcttttccctagttttacattcaaacataactaagataacatataattatctcactgacacaaaatcttt 100  Q
    |||||||||||||||||| || |||||| |||||  ||||| ||||| |||||||||| | ||| |||||||||||| ||||||||| ||||||||||||    
T  6938556 cttttggtaatataaatt-gcatcacatcatctt--ccctatttttagattcaaacattattaaaataacatataatcatctcactggcacaaaatcttt 6938460  T
Q  101 atgt-aaagacatttaa-gtagagactttttatgaaatactaagaaagctatattcccac 158  Q
    |||| |||| | |||||  | ||||||||||||||| |  ||||||||||||||||||||    
T  6938459 atgtgaaaggcttttaatatcgagactttttatgaactcataagaaagctatattcccac 6938400  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 6550333 - 6550429
Alignment:
Q  2 ttttggtaatataaatttgcttcacataatcttttccctagttttacattcaaacataactaagataacatataattatctcactgacacaaaatctt 99  Q
    ||||||||||| ||||| || |||||| ||  ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  6550333 ttttggtaatacaaatt-gcatcacattattctttccctagttttacattcaaacatagttaagataacatataattatctcactggcacaaaatctt 6550429  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 6797236 - 6797345
Alignment:
Q  2 ttttggtaatataaatttgcttcacataatcttttccctagttttacattcaaacataactaagataacatataattatctcactgacacaaaatcttta 101  Q
    ||||||||||||||||| || |||||| | |||||||||| ||||| |||||| ||||| |||||||||| |||||||||||||||||||  |||||||     
T  6797236 ttttggtaatataaatt-gcatcacatcaacttttccctatttttaaattcaatcataattaagataacacataattatctcactgacac--aatctttt 6797332  T
Q  102 tgtaaagacattt 114  Q
    |||||||| ||||    
T  6797333 tgtaaagatattt 6797345  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 7604695 - 7604597
Alignment:
Q  90 acaaaatctttatgtaaagacatttaagtagagactttttatgaaata---ctaagaaagctatattcccacaaaggtatgattagttgataacttttta 186  Q
    ||||||||||||||||||||||||||| | || |||||| ||| ||||   |||||||||||||||||| || |||||||||||||||||||||||||||    
T  7604695 acaaaatctttatgtaaagacatttaaatcgaaacttttcatgtaataatgctaagaaagctatattcctac-aaggtatgattagttgataacttttta 7604597  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 6558857 - 6558940
Alignment:
Q  1 cttttggtaatataaatttgcttcacataatcttttccctagttttacattcaaacataactaagataacatataattatctcac 85  Q
    |||||||||||||||||| ||  ||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  6558857 cttttggtaatataaatt-gcaacacatcatctcttccctagttttaaattcaaacataattaagataacatataattatctcac 6558940  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 6527528 - 6527613
Alignment:
Q  1 cttttggtaatataaatttgcttcacataatcttttccctagttttacattcaaacataactaagataacatataattatctcactg 87  Q
    ||||| |||||||||||| || |||  | ||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||    
T  6527528 cttttagtaatataaatt-gcatcatgtcatcttttccctagttttacattcaaacatagttaagatcacatataattatctcactg 6527613  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 7604465 - 7604412
Alignment:
Q  210 ctgcagtatagttaattgaccttttgaagatttaccgcgcaacaattagtttat 263  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  7604465 ctgcagtatagttaattgaccttttgaagatttactgcgcaacaatcagtttat 7604412  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 6785703 - 6785761
Alignment:
Q  18 ttgcttcacataatcttttccctagttttacattcaaacataactaagataacatataa 76  Q
    ||||||||||| ||| ||||||||| ||||| ||||||||||| |||||||||||||||    
T  6785703 ttgcttcacatcatcctttccctagctttacgttcaaacataattaagataacatataa 6785761  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 6791028 - 6791068
Alignment:
Q  131 tgaaatactaagaaagctatattcccacaaaggtatgatta 171  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  6791028 tgaaatgctaagaaagctatattcccacaaaggtatgatta 6791068  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 6411174 - 6411237
Alignment:
Q  30 atcttttccctagttttacattcaaacataactaagataacatataattatctcactgacacaa 93  Q
    |||||||||||||||||| | |||||||||| ||| |||||||||| || ||||| ||||||||    
T  6411174 atcttttccctagttttaaagtcaaacataattaaaataacatatagttttctcattgacacaa 6411237  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 6937831 - 6937774
Alignment:
Q  218 tagttaattgaccttttgaagatttaccgcgcaacaattagtttatgaattgaaataa 275  Q
    ||||||| |||||||||||| ||||||||| ||| ||| ||||||| || ||||||||    
T  6937831 tagttaactgaccttttgaatatttaccgcacaataatcagtttattaactgaaataa 6937774  T

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Target: scaffold0425 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 12214 - 12380
Alignment:
Q  1 cttttggtaatataaatttgcttcacataatcttttccctagttttacattcaaacataactaagataacatataattatctcactgacacaaaatcttt 100  Q
    |||||||||||||||||| || |||  | ||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||| ||| || | |||    
T  12214 cttttggtaatataaatt-gcatcatgtcatcttttccgtagttttacattcaaacatagttaagatcacatataattatctcactggcac-aatttttt 12311  T
Q  101 atgt-aaagacatttaa-gtagagactttttatgaaatactaagaaagctatattcccacaaaggtatg 167  Q
    |||| |||  |  ||||  | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12312 atgtgaaatgctcttaatatcgagactttttatgaaatactaagaaagctatattcccactaaggtatg 12380  T

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