View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13200_high_15 (Length: 418)
Name: NF13200_high_15
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_15 |
 | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 402
Target Start/End: Complemental strand, 8342072 - 8341681
Alignment:
| Q |
11 |
cagagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattccca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8342072 |
cagagattgcaataacgaaagatttccgagttggaaagggattgtaccaacaagatcattaagactgagattaaggtgttgcaattgtgagagattccca |
8341973 |
T |
|
| Q |
111 |
agttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8341972 |
agttgagtaggaatctttccctcataaccaccgtttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat |
8341873 |
T |
|
| Q |
211 |
tcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaatcgtgtagatcaagcttttc |
310 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8341872 |
tcaaataactgaggtcaagatatgttagatgttacaactcagttattgaaggattgatttcaccactcaaataatgtgaatggtgtagatcaagcttttc |
8341773 |
T |
|
| Q |
311 |
aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataat |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8341772 |
aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatctgcagttggaccgtccttccatgcggacaacatgccataat |
8341681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 8333143 - 8333037
Alignment:
| Q |
27 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
126 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8333143 |
gaaagattttcgagttggaaagggatttttccaacaagatcattaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
8333044 |
T |
|
| Q |
127 |
tcccctc |
133 |
Q |
| |
|
| ||||| |
|
|
| T |
8333043 |
ttccctc |
8333037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 75 - 400
Target Start/End: Complemental strand, 26727604 - 26727282
Alignment:
| Q |
75 |
ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga |
174 |
Q |
| |
|
||||||| |||||||||||| |||||||| || |||||||||| |||||||||| | | | || |||||||||||| |||||||||||| ||| ||| |
|
|
| T |
26727604 |
ctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttctcattaaaaaaggcatttgagagattaaggtatcgtaaattgatga |
26727505 |
T |
|
| Q |
175 |
acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc |
274 |
Q |
| |
|
| || |||||||| ||||| || ||||| ||| | |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26727504 |
aggagccaataaaatttgggatatgacctctaatcatcaatgaactaaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaca |
26727405 |
T |
|
| Q |
275 |
actcaaataatatgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccg |
374 |
Q |
| |
|
| | | |||| || | || | |||||| ||| ||||||||| |||| ||||||||| | ||| |||||||||||||||| ||| || || | |
|
|
| T |
26727404 |
attta---aatacaaaccatgcaaatcaagtctttgaacataacctgtttcgttgttgcataagactcccatccatttgcagcaatctgcattttgatca |
26727308 |
T |
|
| Q |
375 |
tccttccatgcggacaacatgccata |
400 |
Q |
| |
|
|||||||||| |||||| |||||||| |
|
|
| T |
26727307 |
tccttccatgtggacaaaatgccata |
26727282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 400
Target Start/End: Original strand, 29813 - 30192
Alignment:
| Q |
27 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
126 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||| || |||| ||| ||| |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
29813 |
gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct |
29912 |
T |
|
| Q |
127 |
tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc |
226 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
29913 |
tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc |
30012 |
T |
|
| Q |
227 |
tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagcttttcaacataaccg |
320 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | ||| | || |||||||||||||||||||||||| |
|
|
| T |
30013 |
aagatattttagatgttgcaactcagttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccg |
30112 |
T |
|
| Q |
321 |
gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccata |
400 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| ||||| |
|
|
| T |
30113 |
gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccata |
30192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 400
Target Start/End: Complemental strand, 168979 - 168600
Alignment:
| Q |
27 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
126 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||| || |||| ||| ||| |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
168979 |
gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct |
168880 |
T |
|
| Q |
127 |
tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc |
226 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
168879 |
tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc |
168780 |
T |
|
| Q |
227 |
tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagcttttcaacataaccg |
320 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | ||| | || |||||||||||||||||||||||| |
|
|
| T |
168779 |
aagatattttagatgttgcaactcagttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccg |
168680 |
T |
|
| Q |
321 |
gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccata |
400 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| ||||| |
|
|
| T |
168679 |
gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccata |
168600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 402
Target Start/End: Complemental strand, 174003 - 173607
Alignment:
| Q |
12 |
agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa |
111 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||| ||||| || ||||| | || |||| ||||| | ||||||||| ||||| |||| |
|
|
| T |
174003 |
agagactgcaacaatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaagatcaaggtatcacaattgtgatagatttccaa |
173904 |
T |
|
| Q |
112 |
gttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtatt |
211 |
Q |
| |
|
||| | ||||| |||||| |||||| ||||||||| |||||||||| || || |||||||| || ||||||||||||| ||||||| ||||||||| |
|
|
| T |
173903 |
gttcaaaaggaaccttcccatcataatgaccatttgacagatcaaggtgccgcaacttgctgaaggagccaataaattttgagatttgactactagtatt |
173804 |
T |
|
| Q |
212 |
caaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagc |
305 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | | || | || |||||||| |
|
|
| T |
173803 |
caaataactgaggtctaaatatgttagattttgtaactcagttattgaaggattgatttcaccactcaaatgacgtgtttccgagccatgcagatcaaga |
173704 |
T |
|
| Q |
306 |
ttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataat |
402 |
Q |
| |
|
||| ||||||||| |||| |||||||||||| ||| ||||||||||||||||| || || ||||| ||||||||| ||||||||||||||||| |
|
|
| T |
173703 |
ctttgaacataaccagtttcgatgttgcattgaactcccttccatttgcagcaatcttcattttgaccgcccttccatgtggacaacatgccataat |
173607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 44144990 - 44144710
Alignment:
| Q |
12 |
agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa |
111 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||| ||||| || ||||| | || | || ||||||| ||||| ||||||||||||||| |
|
|
| T |
44144990 |
agagactgcaataatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaaaatcaaggtgtcgcaatcgtgagagattcccaa |
44144891 |
T |
|
| Q |
112 |
gttgagtaggaatcttcccctcataaccaccatttgagagatcaa-ggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat |
210 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| ||||||||||| ||| |||||| |||||||| || |||||||||||||| |||||||||| ||||| |
|
|
| T |
44144890 |
gttgagcaggaatcttcccatcataaccaccaactgagagatcaaaggtgtcgtaacttgctgaaggagccaataaattttgggatttgaccaccagtat |
44144791 |
T |
|
| Q |
211 |
tcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaat |
291 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44144790 |
tcaaataacttaggtctagatgtgttagatgttgcagcacagttattgaaggattgatttcaccactcaaatcatatgaat |
44144710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 75 - 402
Target Start/End: Original strand, 44785757 - 44786086
Alignment:
| Q |
75 |
ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga |
174 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
44785757 |
ctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctttccaccgtaaccaccaactgagaggtcaaggtatcgtaagttgctga |
44785856 |
T |
|
| Q |
175 |
acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc |
274 |
Q |
| |
|
| |||||||||||||||||||||||| || ||||| |||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
44785857 |
aggatccaataaattttggaatttgatcattagtaatcaaatgactgaggtctagatattttagatgtcgcagctcagttattgaaggattgattacacc |
44785956 |
T |
|
| Q |
275 |
actcaaataatatgaatcgtgta-gatcaagcttttcaac--ataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttgga |
371 |
Q |
| |
|
|||||||||| || || || | || || || | ||| ||| || ||||| ||||||||||||| ||||| ||||||||| ||||| ||| ||||| |
|
|
| T |
44785957 |
actcaaataacgtgtttc-tgaaccatgcagattctgaacatatatccagtttggttgttgcattgaactccttcccatttgcaacaatctgcatttgga |
44786055 |
T |
|
| Q |
372 |
ccgtccttccatgcggacaacatgccataat |
402 |
Q |
| |
|
||||| ||| ||| ||||||||||||||||| |
|
|
| T |
44786056 |
ccgtctttcgatgtggacaacatgccataat |
44786086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 121 - 400
Target Start/End: Complemental strand, 44611786 - 44611501
Alignment:
| Q |
121 |
gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataact |
220 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||||||||||||| |||||||| ||| || |||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
44611786 |
gaatcttcccatcaaaaccactatttgagagatcaaggtatcttaagttgcagaaggagccaataaattttgggatttgaccactagtattcagataact |
44611687 |
T |
|
| Q |
221 |
gaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaa------ataatatgaatcgtgtagatcaagcttttcaaca |
314 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || | || |||||||| ||| |||| |
|
|
| T |
44611686 |
gaggtttagatatgttagatgttgcaactcagttattgaaggattgatttcaccaaacaatcggcgtcgatacgagccatgcagatcaagactttgaaca |
44611587 |
T |
|
| Q |
315 |
taaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccata |
400 |
Q |
| |
|
||||| |||||| |||||||||||| ||| ||||||||||||||||| ||| || ||| |||||||||| ||||||||| ||||| |
|
|
| T |
44611586 |
taaccagtttgaatgttgcattgaactcccttccatttgcagcaatctgcatctgaaccctccttccatgtggacaacataccata |
44611501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 75 - 394
Target Start/End: Complemental strand, 35899124 - 35898799
Alignment:
| Q |
75 |
ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga |
174 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||| ||| |||| |||||||||||| || |||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
35899124 |
ctgagatcaaggtattgcaacaatgagagattcctaagctgagcaggaatcttcccatcgaaaccactatttgagagatcaatgtatcgcaagttgctga |
35899025 |
T |
|
| Q |
175 |
acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc |
274 |
Q |
| |
|
| || |||||||||||||| ||||||||||||||||||||| ||| ||||||| |||||| ||||||||||| ||||||||| |||| ||||||| || |
|
|
| T |
35899024 |
aggagccaataaattttgggatttgaccactagtattcaaaaaaccaaggtctaaatatgtaagatgttgcaattcagttattaaagggttgattttgcc |
35898925 |
T |
|
| Q |
275 |
actcaaata------atatgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagtt |
368 |
Q |
| |
|
|||||||| | |||| | || | |||||| ||| || |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| || |
|
|
| T |
35898924 |
tctcaaatagcgtgtttttgaaccatgcaaatcaagactttgaatataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcattt |
35898825 |
T |
|
| Q |
369 |
ggaccgtccttccatgcggacaacat |
394 |
Q |
| |
|
|||| || ||||||| |||||||| |
|
|
| T |
35898824 |
ggactatcattccatgtagacaacat |
35898799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 11544676 - 11544933
Alignment:
| Q |
12 |
agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa |
111 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||| ||| ||||| || ||||| | || |||| ||||||| ||| ||||||||||| |||| |
|
|
| T |
11544676 |
agagactgcaacaatgaaagatttccgagttggaaaggaatttctccaatgagttcattgtagctaagatcaaggtgtctcaactgtgagagattgccaa |
11544775 |
T |
|
| Q |
112 |
gttgagtag----gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactag |
207 |
Q |
| |
|
|||||| || |||||||| | | |||| || ||||||||||| |||||||| ||| ||| | || || |||||||||||||| |||||| | |
|
|
| T |
11544776 |
gttgagaaggaatgaatcttcgcatgataataactatttgagagattaaggtatcataacttggttaaggagccaataaattttgggatttgagtgaaaa |
11544875 |
T |
|
| Q |
208 |
tattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggatt |
265 |
Q |
| |
|
|| ||| | ||||||||||| |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
11544876 |
taatcatactactgaggtctaaatattttagatgttgtaactcagttattgaaggatt |
11544933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 44612199 - 44612085
Alignment:
| Q |
12 |
agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa |
111 |
Q |
| |
|
||||| ||||| || ||||||||||| ||||||||||||||| |||| || ||||| || |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
44612199 |
agagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaa |
44612100 |
T |
|
| Q |
112 |
gttgagtaggaatct |
126 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
44612099 |
gttgagaaggaatct |
44612085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 283
Target Start/End: Original strand, 29228546 - 29228802
Alignment:
| Q |
27 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || ||||| || |||| |||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
29228546 |
gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct |
29228645 |
T |
|
| Q |
127 |
tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc |
226 |
Q |
| |
|
|||| |||||| ||| ||||||||| |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
29228646 |
tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc |
29228745 |
T |
|
| Q |
227 |
tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaata |
283 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
29228746 |
tagatattttagatgttgcagctcagttagtgaagaatttatttcaccactcaaata |
29228802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 283
Target Start/End: Original strand, 29341845 - 29342101
Alignment:
| Q |
27 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || ||||| || |||| |||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
29341845 |
gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct |
29341944 |
T |
|
| Q |
127 |
tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc |
226 |
Q |
| |
|
|||| |||||| ||| ||||||||| |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
29341945 |
tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc |
29342044 |
T |
|
| Q |
227 |
tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaata |
283 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
29342045 |
tagatattttagatgttgcagctcagttagtgaagaatttatttcaccactcaaata |
29342101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 29228864 - 29228912
Alignment:
| Q |
347 |
ccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatg |
395 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||| | |||||||| |
|
|
| T |
29228864 |
ccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatg |
29228912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 29342163 - 29342211
Alignment:
| Q |
347 |
ccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatg |
395 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||| | |||||||| |
|
|
| T |
29342163 |
ccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatg |
29342211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 400
Target Start/End: Original strand, 29508253 - 29508356
Alignment:
| Q |
297 |
agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc |
396 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||| ||| ||| ||||||||||||||||| || |||| |||||||||||| ||||||||||| |
|
|
| T |
29508253 |
agatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgc |
29508352 |
T |
|
| Q |
397 |
cata |
400 |
Q |
| |
|
|||| |
|
|
| T |
29508353 |
cata |
29508356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 29508115 - 29508197
Alignment:
| Q |
30 |
agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaag |
112 |
Q |
| |
|
|||||||| |||||||| || |||| ||||| || |||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
29508115 |
agatttccaagttggaagggaattgctccaatgagttcattacctctgagatcaaggtgttgcaattgtgagagatttccaag |
29508197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 29507536 - 29507624
Alignment:
| Q |
27 |
gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg |
115 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||| || ||||| | ||||||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
29507536 |
gaaagattttggagttgtaaagggattgctccaattagttcattgtagctgagatcaaggtgttgtaattgtgagagatttccaagttg |
29507624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 29507611 - 29507696
Alignment:
| Q |
30 |
agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg |
115 |
Q |
| |
|
|||||||| |||||||| || |||| ||||| || ||||| ||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
29507611 |
agatttccaagttggaagggaattgctccaatgagttcattttcgctgagatcaaggtgttgcaattgtgagagatttccaagttg |
29507696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 29507683 - 29507768
Alignment:
| Q |
30 |
agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg |
115 |
Q |
| |
|
|||||||| |||||||| || |||| ||||| || ||||| ||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
29507683 |
agatttccaagttggaagggaattgctccaatgagttcatttctgctgagatcaaggtgttgcaattgtgagagatttccaagttg |
29507768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 29507874 - 29507912
Alignment:
| Q |
77 |
gagattaaggtgttgcaattgtgagagattcccaagttg |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
29507874 |
gagatcaaggtgttgcaattgtgagagatttccaagttg |
29507912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 29507946 - 29507984
Alignment:
| Q |
77 |
gagattaaggtgttgcaattgtgagagattcccaagttg |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
29507946 |
gagatcaaggtgttgcaattgtgagagatttccaagttg |
29507984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 29508090 - 29508128
Alignment:
| Q |
77 |
gagattaaggtgttgcaattgtgagagattcccaagttg |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
29508090 |
gagatcaaggtgttgcaattgtgagagatttccaagttg |
29508128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 29507755 - 29507840
Alignment:
| Q |
30 |
agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg |
115 |
Q |
| |
|
|||||||| |||||||| || ||| ||||| || ||||| | ||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
29507755 |
agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg |
29507840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 29507971 - 29508056
Alignment:
| Q |
30 |
agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg |
115 |
Q |
| |
|
|||||||| |||||||| || ||| ||||| || ||||| | ||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
29507971 |
agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg |
29508056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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