View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_16 (Length: 417)
Name: NF13200_high_16
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 29175080 - 29174754
Alignment:
| Q |
18 |
gtatgcggaagttcttacttggacttatgacaaaagtgtggctcaggctagcgtgagcgagcctagcatatcgctcaccgtgcgccaatcattttacaac |
117 |
Q |
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| T |
29175080 |
gtatgcggaagttcttacttggacttatgacaaaagcgtggctcaggctagcgtgagcgagcctagcatatcgttcaccgtgcgccaatcattttacaac |
29174981 |
T |
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| Q |
118 |
tgttgacatgaacggtcaagattaaaatactcttatctttatcatagtgtgctcccacaatgcagttcactcagttcatcctcaagcaaaggatgtttga |
217 |
Q |
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| T |
29174980 |
tgttgacatgaacggtcaagattaaaatactcttatctttat----gtgtgctcccacaatgcagttcactcagttcatcctcaagcaaaggatgtttga |
29174885 |
T |
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| Q |
218 |
ctcaaggacctatctgttgttgcacccactccgtcggtgaccaacaaattgatctccataatccaagacaaaattgaacaaaaaccataaaagcgtgata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29174884 |
ctcaaggacctatctgttgttgcacccactccgtcgatgaccaacaaattgatctccataatccaagacaaaatcgaacaaaaaccataaaagcgtgata |
29174785 |
T |
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| Q |
318 |
ccaatcctgtacaaatctagaaggcatttaa |
348 |
Q |
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||||||||| ||||||||||||||||||||| |
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| T |
29174784 |
ccaatcctgaacaaatctagaaggcatttaa |
29174754 |
T |
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