View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13200_high_17 (Length: 405)

Name: NF13200_high_17
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13200_high_17
NF13200_high_17
[»] chr4 (14 HSPs)
chr4 (1-398)||(54147556-54147955)
chr4 (13-140)||(16870567-16870700)
chr4 (309-386)||(16870777-16870858)
chr4 (156-227)||(16870654-16870724)
chr4 (129-223)||(42265400-42265492)
chr4 (359-398)||(16871279-16871318)
chr4 (13-55)||(16870396-16870438)
chr4 (267-307)||(16870798-16870838)
chr4 (307-347)||(24225506-24225546)
chr4 (310-365)||(16870685-16870738)
chr4 (268-328)||(16870705-16870766)
chr4 (307-346)||(42265453-42265492)
chr4 (310-347)||(42265426-42265462)
chr4 (227-255)||(7259335-7259363)
[»] chr2 (24 HSPs)
chr2 (16-204)||(1173541-1173731)
chr2 (13-243)||(38584083-38584322)
chr2 (67-243)||(1173469-1173647)
chr2 (252-328)||(1173447-1173523)
chr2 (252-339)||(1173343-1173430)
chr2 (13-140)||(8986129-8986262)
chr2 (156-253)||(1173273-1173372)
chr2 (156-240)||(1173379-1173465)
chr2 (309-369)||(1173283-1173343)
chr2 (310-370)||(1173468-1173528)
chr2 (309-366)||(1173379-1173436)
chr2 (307-378)||(38584074-38584145)
chr2 (156-227)||(8986216-8986286)
chr2 (359-398)||(8986555-8986594)
chr2 (248-306)||(1173283-1173341)
chr2 (357-393)||(32290827-32290863)
chr2 (67-140)||(32290565-32290642)
chr2 (64-112)||(32290597-32290645)
chr2 (307-347)||(38584202-38584242)
chr2 (252-307)||(38584082-38584137)
chr2 (305-347)||(32290556-32290598)
chr2 (365-398)||(1173181-1173214)
chr2 (310-386)||(8986247-8986327)
chr2 (307-347)||(38584136-38584176)
[»] chr5 (20 HSPs)
chr5 (156-339)||(24136891-24137075)
chr5 (252-370)||(24136927-24137043)
chr5 (13-140)||(11335415-11335537)
chr5 (310-376)||(11335364-11335430)
chr5 (156-225)||(24137046-24137114)
chr5 (130-244)||(9511782-9511899)
chr5 (16-140)||(9511732-9511854)
chr5 (146-253)||(11335361-11335469)
chr5 (350-398)||(24137213-24137261)
chr5 (307-370)||(24136919-24136981)
chr5 (350-398)||(9512063-9512111)
chr5 (295-347)||(24136876-24136928)
chr5 (309-393)||(24137075-24137163)
chr5 (94-173)||(9511777-9511856)
chr5 (13-60)||(24136725-24136772)
chr5 (156-224)||(9511777-9511845)
chr5 (313-347)||(9511811-9511845)
chr5 (307-369)||(9511836-9511898)
chr5 (252-306)||(11335371-11335425)
chr5 (156-203)||(24136808-24136855)
[»] chr7 (40 HSPs)
chr7 (13-162)||(21813771-21813918)
chr7 (268-347)||(44338338-44338416)
chr7 (13-162)||(11828578-11828721)
chr7 (13-140)||(46963841-46963974)
chr7 (252-339)||(15623052-15623139)
chr7 (156-227)||(15623104-15623174)
chr7 (248-339)||(15623145-15623236)
chr7 (125-243)||(21813819-21813940)
chr7 (268-339)||(44338430-44338500)
chr7 (156-243)||(44338287-44338375)
chr7 (146-227)||(11828575-11828656)
chr7 (156-227)||(15623197-15623267)
chr7 (83-193)||(11828578-11828688)
chr7 (13-140)||(44338205-44338333)
chr7 (156-243)||(44338379-44338467)
chr7 (309-370)||(44338500-44338561)
chr7 (156-232)||(15623006-15623081)
chr7 (156-243)||(44338471-44338560)
chr7 (268-316)||(44338522-44338570)
chr7 (309-370)||(15623084-15623145)
chr7 (156-254)||(46963788-46963887)
chr7 (271-339)||(15623238-15623306)
chr7 (310-370)||(44338318-44338376)
chr7 (310-370)||(44338410-44338468)
chr7 (359-398)||(46963508-46963547)
chr7 (98-171)||(21813823-21813896)
chr7 (310-347)||(21813850-21813887)
chr7 (350-398)||(21813995-21814043)
chr7 (310-386)||(46963778-46963856)
chr7 (309-355)||(15623192-15623238)
chr7 (13-105)||(6530553-6530643)
chr7 (310-353)||(11828572-11828615)
chr7 (309-352)||(15623009-15623052)
chr7 (224-254)||(26403153-26403183)
chr7 (224-254)||(44338654-44338684)
chr7 (307-372)||(21813878-21813943)
chr7 (351-392)||(24487013-24487054)
chr7 (307-344)||(24487088-24487125)
chr7 (307-347)||(11828609-11828649)
chr7 (150-190)||(24487088-24487128)
[»] chr3 (16 HSPs)
chr3 (156-254)||(42530736-42530835)
chr3 (13-173)||(50295478-50295636)
chr3 (252-339)||(46692012-46692099)
chr3 (309-370)||(46692044-46692105)
chr3 (149-243)||(46692045-46692141)
chr3 (310-376)||(42530767-42530831)
chr3 (95-241)||(50295527-50295677)
chr3 (349-398)||(50295901-50295950)
chr3 (296-347)||(42530722-42530773)
chr3 (309-378)||(46691942-46692012)
chr3 (357-398)||(42531001-42531042)
chr3 (357-398)||(46691887-46691928)
chr3 (248-304)||(50295620-50295677)
chr3 (156-227)||(46691970-46692041)
chr3 (84-123)||(2593560-2593599)
chr3 (307-339)||(50295554-50295586)
[»] chr1 (16 HSPs)
chr1 (309-378)||(15629922-15629990)
chr1 (13-162)||(2072369-2072519)
chr1 (310-370)||(15630022-15630081)
chr1 (13-162)||(2075899-2076049)
chr1 (252-328)||(15630001-15630076)
chr1 (156-250)||(15629924-15630019)
chr1 (161-243)||(15630023-15630107)
chr1 (146-219)||(19825091-19825164)
chr1 (147-229)||(2072364-2072446)
chr1 (147-229)||(2075894-2075976)
chr1 (26-154)||(19825094-19825223)
chr1 (307-347)||(19825117-19825157)
chr1 (359-398)||(15629796-15629835)
chr1 (130-193)||(15630044-15630107)
chr1 (98-162)||(15630044-15630108)
chr1 (315-347)||(15630075-15630107)
[»] chr8 (19 HSPs)
chr8 (268-347)||(20242015-20242093)
chr8 (268-347)||(20250974-20251052)
chr8 (268-339)||(20242107-20242177)
chr8 (156-243)||(20241964-20242052)
chr8 (156-243)||(20251015-20251103)
chr8 (13-140)||(20241882-20242010)
chr8 (156-243)||(20242056-20242144)
chr8 (156-243)||(20250923-20251011)
chr8 (13-140)||(20251057-20251185)
chr8 (309-370)||(20242177-20242238)
chr8 (156-243)||(20242148-20242237)
chr8 (268-316)||(20242199-20242247)
chr8 (310-370)||(20241995-20242053)
chr8 (310-370)||(20242087-20242145)
chr8 (310-370)||(20250922-20250980)
chr8 (310-370)||(20251014-20251072)
chr8 (268-316)||(20250913-20250960)
chr8 (224-254)||(20242331-20242361)
chr8 (224-254)||(20250799-20250829)
[»] chr6 (25 HSPs)
chr6 (252-346)||(21862276-21862371)
chr6 (247-339)||(28063589-28063679)
chr6 (309-370)||(21862270-21862332)
chr6 (267-328)||(13167536-13167597)
chr6 (156-227)||(21862241-21862311)
chr6 (148-241)||(21862043-21862137)
chr6 (268-339)||(21862102-21862173)
chr6 (156-226)||(21862144-21862213)
chr6 (156-244)||(28063528-28063618)
chr6 (311-370)||(28063621-28063678)
chr6 (359-398)||(9291085-9291124)
chr6 (321-370)||(13167527-13167576)
chr6 (188-243)||(28063622-28063678)
chr6 (252-328)||(21862179-21862259)
chr6 (269-327)||(13167445-13167502)
chr6 (309-355)||(21862173-21862219)
chr6 (310-367)||(21862082-21862137)
chr6 (357-398)||(28063465-28063506)
chr6 (310-350)||(10741529-10741569)
chr6 (67-112)||(13167367-13167412)
chr6 (19-60)||(28063772-28063813)
chr6 (68-136)||(13097907-13097975)
chr6 (156-188)||(13167579-13167611)
chr6 (156-192)||(21862335-21862371)
chr6 (309-369)||(28063529-28063589)
[»] scaffold0499 (2 HSPs)
scaffold0499 (68-167)||(7233-7329)
scaffold0499 (311-340)||(7304-7333)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 54147556 - 54147955
Alignment:
Q  1 tttggattcgctttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatt----t 96  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||||| ||||||||||| |  | |||||||||| |||||||||||||  |||    |    
T  54147556 tttggattcattttgaatttgtttggttgttaggtgagtcaagatagtcctcacaattggtt--tgtttgtttggtaggtcaagtgctcactattggatt 54147653  T
Q  97 gtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtt 196  Q
    ||||||||| || |||| ||||||| | |||  ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  54147654 gtttgtttggtgggtcaagtgctcataatttgtttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggttgtt 54147753  T
Q  197 tggtgagtttggtgctcacaatttggtttc--tcccccttttgattcttttgattgattgtttggtgggtgaagtgctcataatttggtttcttctcccc 294  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||| |||    
T  54147754 tggtgagtttggtgctcacaatttggtttctttcccccttttgattcttctgattgattgtttggtgggtcgagtgctcataatttggtttcttct-ccc 54147852  T
Q  295 cttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgcacttctcccacttttga 394  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54147853 cttttgattcttcaagttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc-ccttttgattcttctgattgcacttctcccacttttga 54147951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 16870567 - 16870700
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 106  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  16870567 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 16870666  T
Q  107 tgagtcaggtgctcacactttagttgtttggtga 140  Q
    ||||||   | |||||||||| ||||||||||||    
T  16870667 tgagtcgatttctcacactttggttgtttggtga 16870700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 386
Target Start/End: Original strand, 16870777 - 16870858
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc----tgattgcacttctccc 386  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| | |||| |||||||    ||||||||||||||||    
T  16870777 atttggttgtttcgtgagtcgagtgctcataatttggtttcttctccccttttttattcttctcattgattgcacttctccc 16870858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 16870654 - 16870724
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 227  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||    
T  16870654 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttct 16870724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 42265400 - 42265492
Alignment:
Q  129 gttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt 223  Q
    |||||||||||| | | ||||||||  ||||||||||||||||||| ||| |||||| |||||||||||||||| |   ||||||||||||||||    
T  42265400 gttgtttggtga-tcaagtgctcactgtttggttgtttggtgagtcgagt-ctcacaatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 16871279 - 16871318
Alignment:
Q  359 ttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  16871279 ttttgattcttctaattgcacttctcccacttttgatgat 16871318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 16870396 - 16870438
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcaca 55  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  16870396 ttcaatttgtttggttgtttggtgagtcaaaatagtgctcaca 16870438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 16870798 - 16870838
Alignment:
Q  267 agtgctcataatttggtttcttctcccccttttgattcttc 307  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  16870798 agtgctcataatttggtttcttctccccttttttattcttc 16870838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 24225506 - 24225546
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  24225506 caatttggttgtttggtgaatcgagtgcttacaatttggtt 24225546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 16870685 - 16870738
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgat 365  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||    
T  16870685 tttggttgtttggtgag-catgtgctcacaatttggtttcttctcc-ccttttgat 16870738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 16870705 - 16870766
Alignment:
Q  268 gtgctcataatttggtttcttctcccccttttg--attcttcaatttggttgtttggtgagtc 328  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||||||||| || |||||||    
T  16870705 gtgctcacaatttggtttcttct-ccccttttgatattcttcaatttggttgattagtgagtc 16870766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 42265453 - 42265492
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttggt 346  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  42265453 caatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 42265426 - 42265462
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42265426 tttggttgtttggtgagtcgagt-ctcacaatttggtt 42265462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 7259363 - 7259335
Alignment:
Q  227 tcccccttttgattcttttgattgattgt 255  Q
    |||||||||||||||||||||||||||||    
T  7259363 tcccccttttgattcttttgattgattgt 7259335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 1173731 - 1173541
Alignment:
Q  16 aatttgtttggttgttaggtgagtcaagatagtgctcacaattggata--ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtca 113  Q
    ||||||||||||||||||||||||||||||||| |||| |||||| |   || ||||||||||||||||||||||||||||||||||||||| || |||     
T  1173731 aatttgtttggttgttaggtgagtcaagatagttctcaaaattggtttgtttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgggtcg 1173632  T
Q  114 ggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagt 204  Q
     ||||||| | |||  ||||||||||| |   || |||| | ||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  1173631 agtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgtttggtgagt 1173541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 38584322 - 38584083
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattat---ttgtttggtgggtcaagtgctcataatttgtttgtttgatga 109  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | | |  |   ||||||||||||| |||  |||| |||||| ||||||| |||    
T  38584322 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaatttggtttgttcgtttgtttggtgggt-aagcactcacaatttgcttgtttggtga 38584224  T
Q  110 gtcaggtgctcacactttagttgtttggt----gaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtt 205  Q
    |||  ||||||||| ||| ||||||||||    || | | ||||||||| |||||| |||||||||||  ||| |||||| |||||||||||||||||||    
T  38584223 gtcgagtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttgtttggtgagtt 38584124  T
Q  206 tggtgctcacaatttg---gtttctcccccttttgattctt 243  Q
       |||||||||||||    |||||||||||||||||||||    
T  38584123 aaatgctcacaatttgattttttctcccccttttgattctt 38584083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 1173647 - 1173469
Alignment:
Q  67 tttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgttt 166  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||  || |||| | ||| |||||||||||| |   |||||||||  ||| ||||||    
T  1173647 tttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgttt 1173548  T
Q  167 ggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 243  Q
    |||||||  ||  |||||| |||||||||||||||||| | ||||||||||||||||   ||||| ||||||||||||||    
T  1173547 ggtgagt-aagcgctcacactttggttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattctt 1173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 1173523 - 1173447
Alignment:
Q  252 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 328  Q
    |||||||||| ||  |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1173523 ttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattcttcaatttggttgtttggtgagtc 1173447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 1173430 - 1173343
Alignment:
Q  252 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 339  Q
    |||||||||| ||  ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  1173430 ttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgattattcaatttggttgtttggtgagtctagttctcaca 1173343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 8986129 - 8986262
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 106  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  8986129 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 8986228  T
Q  107 tgagtcaggtgctcacactttagttgtttggtga 140  Q
    ||||||   | |||||||||| ||||||||||||    
T  8986229 tgagtcgatttctcacactttggttgtttggtga 8986262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 1173372 - 1173273
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattcttttgattgat 252  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  |||||||    
T  1173372 tttggttgtttggtgagtctagttctcaca-tttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattcttgggattgat 1173274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 1173465 - 1173379
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgatt 240  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||| |||||||||||   |||||||||||||||||    
T  1173465 tttggttgtttggtgagtctaattctcacattt-ggttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgatt 1173379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 1173343 - 1173283
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattctt 369  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  1173343 atttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattctt 1173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 1173528 - 1173468
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  1173528 tttggttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattcttc 1173468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 1173436 - 1173379
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgatt 366  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  1173436 atttggttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgatt 1173379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 38584145 - 38584074
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgca 378  Q
    |||||||||||||||||||||  | ||||||||||||| ||| |||||| ||||||||||||||| ||||||    
T  38584145 caatttggttgtttggtgagttaaatgctcacaatttgattttttctcccccttttgattcttctaattgca 38584074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 8986216 - 8986286
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 227  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||    
T  8986216 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttct 8986286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 8986555 - 8986594
Alignment:
Q  359 ttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8986555 ttttgattcttctgattgcacttctcccacttttgatgat 8986594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 1173341 - 1173283
Alignment:
Q  248 ttgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattctt 306  Q
    |||||||||| ||| ||  |||||||| |||||||||||||||||||||||||||||||    
T  1173341 ttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattctt 1173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 32290827 - 32290863
Alignment:
Q  357 ccttttgattcttctgattgcacttctcccacttttg 393  Q
    |||||||||||||||||||||||||||||||||||||    
T  32290827 ccttttgattcttctgattgcacttctcccacttttg 32290863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 32290565 - 32290642
Alignment:
Q  67 tttgtttggtgggtcaagtgctcataatttg----tttgtttgatgagtcaggtgctcacactttagttgtttggtga 140  Q
    |||||||||||||||||||||||| ||||||    ||| |||| || |||| ||||||||| ||| ||||||||||||    
T  32290565 tttgtttggtgggtcaagtgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtga 32290642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 32290597 - 32290645
Alignment:
Q  64 ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 112  Q
    |||||| |||||||||||||||||||| |||||| ||||||| ||||||    
T  32290597 ttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagtc 32290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 38584242 - 38584202
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  38584242 caatttgcttgtttggtgagtcgagtgctcacattttggtt 38584202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 38584137 - 38584082
Alignment:
Q  252 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttc 307  Q
    |||||||||| || || |||||| |||||| ||| |||||||||||||||||||||    
T  38584137 ttgtttggtgagttaaatgctcacaatttgattttttctcccccttttgattcttc 38584082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 32290556 - 32290598
Alignment:
Q  305 ttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||    
T  32290556 ttcaatttgtttgtttggtgggtcaagtgctcacaatttggtt 32290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 398
Target Start/End: Complemental strand, 1173214 - 1173181
Alignment:
Q  365 ttcttctgattgcacttctcccacttttgatgat 398  Q
    ||||||||||||||||||| ||||||||||||||    
T  1173214 ttcttctgattgcacttcttccacttttgatgat 1173181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 8986247 - 8986327
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttc-ttctcctccttttgattcttc----tgattgcacttctccc 386  Q
    ||||||||||||||||| |  ||||||||||||||||||| |||||| | |||| |||||||    ||||||||||||||||    
T  8986247 tttggttgtttggtgag-catgtgctcacaatttggtttctttctccccttttttattcttctcattgattgcacttctccc 8986327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 38584176 - 38584136
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  38584176 caatttggtagtttggtgagttaagtgctcacaatttggtt 38584136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 156 - 339
Target Start/End: Original strand, 24136891 - 24137075
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 253  Q
    ||||||||||||||||| | | |||||||| ||||||||||||||||||   ||||||||||||| ||||||  ||||||| ||||||||    ||| ||    
T  24136891 tttggttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcacaattttgtttcttccccccttctgattcttcaatttggtt 24136990  T
Q  254 gtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 339  Q
    |||||||| ||  ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  24136991 gtttggtgagtctagttctcacaatttggtttcttctccccc-tttgattcttcaatttggttgtttggtgagtctagttctcaca 24137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 24136927 - 24137043
Alignment:
Q  252 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtttctt 351  Q
    |||||||||| ||  |||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  24136927 ttgtttggtgagtcgagtgctcacaattttgtttcttc-cccccttctgattcttcaatttggttgtttggtgagtctagttctcacaatttggtttctt 24137025  T
Q  352 ctcctccttttgattcttc 370  Q
    |||| || |||||||||||    
T  24137026 ctcc-ccctttgattcttc 24137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 11335537 - 11335415
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |  | ||||||||| |||||||||||||| |||||||||||||| || |      
T  11335537 ttcaatttgtttggttgtt-ggtgagtcaagatagtgctcacaattggtt--tgtttgtttggcgggtcaagtgctcacaatttgtttgtttggtggg-- 11335443  T
Q  113 aggtgctcacactttagttgtttggtga 140  Q
    | || |||||||||| ||||||||||||    
T  11335442 aagtactcacactttggttgtttggtga 11335415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 11335430 - 11335364
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattg 376  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  11335430 tttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattcttttgattg 11335364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 24137046 - 24137114
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggttt 225  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  24137046 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaatttggttt 24137114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 9511782 - 9511899
Alignment:
Q  130 ttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttc--- 226  Q
    ||||||||||| |   |||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||   | ||||||||||| ||||       
T  9511782 ttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttgatttctta 9511881  T
Q  227 tcccccttttgattcttt 244  Q
    ||||||||||||||||||    
T  9511882 tcccccttttgattcttt 9511899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 9511732 - 9511854
Alignment:
Q  16 aatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcagg 115  Q
    |||||||||||||||||||||||| |||||||| ||||||||| |   || ||||||||||| ||| |||||||| | || | ||||||| ||||||  |    
T  9511732 aatttgtttggttgttaggtgagttaagatagtcctcacaattcg--tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgag 9511829  T
Q  116 tgctcacactttagttgtttggtga 140  Q
    |||||||| ||| ||||||||||||    
T  9511830 tgctcacaatttggttgtttggtga 9511854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 11335469 - 11335361
Alignment:
Q  146 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct---cccccttttgattct 242  Q
    ||||||||| |||| |||||||||| |   ||| |||||| ||||||||||||||||||    |||||||||||||||||||   |||||||||||||||    
T  11335469 gtgctcacaatttgtttgtttggtggga--agtactcacactttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattct 11335372  T
Q  243 tttgattgatt 253  Q
    |||||||||||    
T  11335371 tttgattgatt 11335361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 24137213 - 24137261
Alignment:
Q  350 ttctcctccttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24137213 ttctcccccttttgattcttctgattgcacttctcccacttttgatgat 24137261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 370
Target Start/End: Original strand, 24136919 - 24136981
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||||||    
T  24136919 caatttggttgtttggtgagtcgagtgctcacaattttgtttcttc-cccccttctgattcttc 24136981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 9512063 - 9512111
Alignment:
Q  350 ttctcctccttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  9512063 ttctcccccttttgattcttttgattgcacttctcccacttttgatgat 9512111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 24136876 - 24136928
Alignment:
Q  295 cttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    |||||||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  24136876 cttttgattcttcaatttggttgtttggtgagccgacttctcacaatttggtt 24136928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 393
Target Start/End: Original strand, 24137075 - 24137163
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttct-cctccttttgattcttct----gattgcacttctcccacttttg 393  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| || ||||||| |||||||    ||||||||||||||| ||||||    
T  24137075 atttggttgtttggtgagttgagtgctcacaatttggttt-ttctccccccttttggttcttctaatagattgcacttctcccccttttg 24137163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 9511777 - 9511856
Alignment:
Q  94 tttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagt 173  Q
    |||||||||||| ||||||  ||||||||||||  |||||||||||| |   ||||||||| ||||||||||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagt 9511856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 24136725 - 24136772
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattgg 60  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  24136725 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattgg 24136772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 9511777 - 9511845
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtt 224  Q
    |||| |||||||||||||| ||| |||||| || |||||||||||||||   |||||||||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 9511811 - 9511845
Alignment:
Q  313 ggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    |||||||||||||||||||||||||||||||||||    
T  9511811 ggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 9511836 - 9511898
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattctt 369  Q
    |||||||||||||||||||||  | | ||||||||||| |||||| ||| |||||||||||||    
T  9511836 caatttggttgtttggtgagttaaatactcacaatttgatttcttatcccccttttgattctt 9511898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 11335425 - 11335371
Alignment:
Q  252 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattctt 306  Q
    |||||||||| ||  | |||||| |||||||||||||||||||||||||||||||    
T  11335425 ttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattctt 11335371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 24136808 - 24136855
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgag 203  Q
    |||| ||||| |||||||| |||||||||||| |||||||||||||||    
T  24136808 tttgcttgttgggtgagtcgagttctcacattatggttgtttggtgag 24136855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 21813771 - 21813918
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 112  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||| |  ||||||||||||| |||||||||||| | |||| ||||||| ||||||    
T  21813771 ttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtt--tatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtc 21813868  T
Q  113 aggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 162  Q
      ||||||||| ||| |||| |||||||| || || | |||| |||||||    
T  21813869 gagtgctcacaatttggttgcttggtgaaataagtacccacaatttggtt 21813918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 44338338 - 44338416
Alignment:
Q  268 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  44338338 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 44338416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 11828721 - 11828578
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 112  Q
    ||||||||||||| ||||  | |||| ||||||||||||||||||| | ||      ||||||||||||||||||||| |||||| |||| || ||||||    
T  11828721 ttcaatttgtttgattgtaggatgagacaagatagtgctcacaatttgtta------gtttggtgggtcaagtgctcacaatttggttgtctggtgagtc 11828628  T
Q  113 aggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 162  Q
     |||||||||| ||| |||||||||||| ||| || |||||| |||||||    
T  11828627 gggtgctcacattttggttgtttggtgagttaagtactcacaatttggtt 11828578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 46963974 - 46963841
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 106  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  46963974 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 46963875  T
Q  107 tgagtcaggtgctcacactttagttgtttggtga 140  Q
    ||||||   | |||||||||| ||||||||||||    
T  46963874 tgagtcgatttctcacactttggttgtttggtga 46963841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 15623139 - 15623052
Alignment:
Q  252 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 339  Q
    |||||||||| ||  |||||||| ||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||||    
T  15623139 ttgtttggtgagttgagtgctcacaattttgtttcttctccccctactgattcttcaatttggttgtttggtgagtctagttctcaca 15623052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 15623174 - 15623104
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 227  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||    
T  15623174 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaattttgtttct 15623104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 339
Target Start/End: Complemental strand, 15623236 - 15623145
Alignment:
Q  248 ttgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 339  Q
    |||||||||||||| ||  |||||||| ||||| |||||||||||||||   ||||||||||||||||||||||||||||| ||| ||||||    
T  15623236 ttgattgtttggtgagttgagtgctcacaattttgtttcttctccccctaccgattcttcaatttggttgtttggtgagtctagttctcaca 15623145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 21813819 - 21813940
Alignment:
Q  125 tttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttgg-- 222  Q
    |||| ||||||||||| | | ||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||  |  || | ||||||||||      
T  21813819 tttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtgaaataagtacccacaatttggtt 21813918  T
Q  223 -tttctcccccttttgattctt 243  Q
     |||||||||||||||||||||    
T  21813919 ttttctcccccttttgattctt 21813940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 44338430 - 44338500
Alignment:
Q  268 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 339  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  44338430 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttggtgagtagagttctcaca 44338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 44338287 - 44338375
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 243  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  44338287 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 44338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 11828656 - 11828575
Alignment:
Q  146 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 227  Q
    ||||||||| ||||||||| |||||||||  || ||||||||||||||||||||||||||  || |||||||||||||||||    
T  11828656 gtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactcacaatttggtttct 11828575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 15623267 - 15623197
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 227  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||| ||||||    
T  15623267 tttggttgtttggtgagtctagttctcaca-tttgattgtttggtgagttgagtgctcacaattttgtttct 15623197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 11828688 - 11828578
Alignment:
Q  83 agtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctc 182  Q
    |||||||| |||||||| ||||| || |||| ||||||||| ||| ||||| |||||| |  |||||||||| ||||||||||||||||||  ||| |||    
T  11828688 agtgctcacaatttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactc 11828589  T
Q  183 acattttggtt 193  Q
    ||| |||||||    
T  11828588 acaatttggtt 11828578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 44338205 - 44338333
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 110  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  44338205 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 44338303  T
Q  111 tcaggtgctcacactttagttgtttggtga 140  Q
    ||  || |||||| ||| ||||||||||||    
T  44338304 tcgagttctcacattttggttgtttggtga 44338333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 44338379 - 44338467
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 243  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  44338379 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 44338467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 44338500 - 44338561
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  44338500 atttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattcttc 44338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 15623081 - 15623006
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctccccc 232  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||| ||| ||||||| ||||    
T  15623081 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgtgtgctcacgattcggtttcttcccc 15623006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 44338471 - 44338560
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 243  Q
    ||||||||||||||||||  |||||||||| ||||||||| ||||||||   ||||||||||||||||   ||||||||||||||||||||    
T  44338471 tttggttgtttggtgagtagagttctcaca-tttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattctt 44338560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 44338522 - 44338570
Alignment:
Q  268 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 316  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44338522 gtgctcacaatttggtttcttctcccccttttgattcttcaatttggtt 44338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 15623145 - 15623084
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| |||  |||||||||    
T  15623145 atttggttgtttggtgagttgagtgctcacaattttgtttcttctccccctactgattcttc 15623084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 46963887 - 46963788
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 253  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||| |||||| | |||||||    
T  46963887 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttcttctcccctttttattcttctcattgatt 46963789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 15623306 - 15623238
Alignment:
Q  271 ctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 339  Q
    |||| ||||||||||||||||||| |  || ||||||||||||||||||||||||||| ||| ||||||    
T  15623306 ctcacaatttggtttcttctccccgtactggttcttcaatttggttgtttggtgagtctagttctcaca 15623238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 44338318 - 44338376
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  44338318 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 44338376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 44338410 - 44338468
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  44338410 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 44338468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 46963547 - 46963508
Alignment:
Q  359 ttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46963547 ttttgattcttctgattgcacttctcccacttttgatgat 46963508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 21813823 - 21813896
Alignment:
Q  98 tttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtga 171  Q
    |||||||| ||||||| ||||||||||||| |||||||||||| |   ||||||||| |||||||| |||||||    
T  21813823 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtga 21813896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 21813850 - 21813887
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21813850 tttggttgtttggtgagtcgagtgctcacaatttggtt 21813887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 21813995 - 21814043
Alignment:
Q  350 ttctcctccttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    |||||| |||||||||| |||| ||||||||||||||||||||||||||    
T  21813995 ttctcccccttttgattgttctaattgcacttctcccacttttgatgat 21814043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 46963856 - 46963778
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc----tgattgcacttctccc 386  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||| |||||| |||||||    ||||||||||||||||    
T  46963856 tttggttgtttggtgag-catgtgctcacaatttggtttcttctcc-cctttttattcttctcattgattgcacttctccc 46963778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 15623238 - 15623192
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 355  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  15623238 atttgattgtttggtgagttgagtgctcacaattttgtttcttctcc 15623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 6530553 - 6530643
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttg 105  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||||||||   || | ||||||||| ||||| || ||| |||||| |||||||    
T  6530553 ttcaatttgtttgattgttgggtgagtcaagatagtattcacaattgg--tttgtctgtttggtgagtcaaatgttcacaatttggttgtttg 6530643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 11828615 - 11828572
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttct 353  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  11828615 tttggttgtttggtgagttaagtactcacaatttggtttcttct 11828572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 15623052 - 15623009
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttc 352  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||    
T  15623052 atttggttgtttggtgagtcgtgtgctcacgattcggtttcttc 15623009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 26403153 - 26403183
Alignment:
Q  224 ttctcccccttttgattcttttgattgattg 254  Q
    |||||||||||||||||||||||||||||||    
T  26403153 ttctcccccttttgattcttttgattgattg 26403183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 44338654 - 44338684
Alignment:
Q  224 ttctcccccttttgattcttttgattgattg 254  Q
    |||||||||||||||||||||||||||||||    
T  44338654 ttctcccccttttgattcttttgattgattg 44338684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 21813878 - 21813943
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctg 372  Q
    ||||||||||| |||||||    ||| | ||||||||||||| |||||| ||||||||||||||||    
T  21813878 caatttggttgcttggtgaaataagtacccacaatttggttttttctcccccttttgattcttctg 21813943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 24487054 - 24487013
Alignment:
Q  351 tctcctccttttgattcttctgattgcacttctcccactttt 392  Q
    ||||||||| ||||||||| |||||||||||||| |||||||    
T  24487054 tctcctcctattgattcttttgattgcacttctctcactttt 24487013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 24487125 - 24487088
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttg 344  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  24487125 caatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 11828649 - 11828609
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    |||||||||||| |||||||||| ||||||||| |||||||    
T  11828649 caatttggttgtctggtgagtcgggtgctcacattttggtt 11828609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 24487128 - 24487088
Alignment:
Q  150 tcacactttggttgtttggtgagtctagttctcacattttg 190  Q
    ||||| ||||||||||||||||||| |||||||||| ||||    
T  24487128 tcacaatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 42530736 - 42530835
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 253  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   ||||||||||||||| |||||||||    
T  42530736 tttggttgtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattcttctgattgatt 42530834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 50295478 - 50295636
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 112  Q
    ||||||||||||||||||| | |||||  ||||||||| ||||||| |||  | ||||||| |||||||||||||||| |||||| ||||||  ||||||    
T  50295478 ttcaatttgtttggttgttggatgagttgagatagtgcacacaatttgat--tgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtc 50295575  T
Q  113 aggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagt 173  Q
      ||||||||||||  |||||||||||| ||  || |||  |||||| |||||||||||||    
T  50295576 gagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattgtttggtgagt 50295636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 46692099 - 46692012
Alignment:
Q  252 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 339  Q
    |||||||||| ||  |||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  46692099 ttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattcttcaatttggtggtttggtgagtctagttctcaca 46692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 46692105 - 46692044
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  46692105 atttagttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattcttc 46692044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 46692141 - 46692045
Alignment:
Q  149 ctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 243  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||   ||||||||||||||||   ||||| ||||||||||||||    
T  46692141 ctcacaatttggttgtttggtgagtctaattctcaca-tttagttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattctt 46692045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 42530767 - 42530831
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattg 376  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  42530767 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttctgattg 42530831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 241
Target Start/End: Original strand, 50295527 - 50295677
Alignment:
Q  95 ttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttg 194  Q
    ||||||||||  || |||| ||||||||| ||| ||||||| |||| |   |||||||||||| |||||||||||||||  |||||||  | |||| |||    
T  50295527 ttgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattg 50295626  T
Q  195 tttggtgagtttggtgctcacaatttggtttct----cccccttttgattc 241  Q
    |||||||||||  || |||| ||||||||||||    ||||||||||||||    
T  50295627 tttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 50295901 - 50295950
Alignment:
Q  349 cttctcctccttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  50295901 cttctccctcttttgattcttctgattgcacttctcccacttttgatgat 50295950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 42530722 - 42530773
Alignment:
Q  296 ttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  42530722 ttttgattctttaatttggttgtttggtgagtcgagttctcacactttggtt 42530773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 46692012 - 46691942
Alignment:
Q  309 atttggttgttt-ggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgca 378  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||   | |||| |||||||||||||||    
T  46692012 atttggttgttttggtgagtcgagtgttcacaatttggtttcttctttccttttttattcttctgattgca 46691942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 42531001 - 42531042
Alignment:
Q  357 ccttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  42531001 ccttttgattcttctgattgcacttctcccacttttaatgat 42531042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 46691928 - 46691887
Alignment:
Q  357 ccttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  46691928 ccttttaattcttctgattgcacttctcccacttttgatgat 46691887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 50295620 - 50295677
Alignment:
Q  248 ttgattgtttggtgggtgaagtgctcataatttggtttcttct-cccccttttgattc 304  Q
    |||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||    
T  50295620 ttgattgtttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 46692041 - 46691970
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgttt-ggtgagtttggtgctcacaatttggtttct 227  Q
    |||||| |||||||||||||||||||||||||| |||||||| |||||||   ||| ||||||||||||||||    
T  46692041 tttggtggtttggtgagtctagttctcacattt-ggttgttttggtgagtcgagtgttcacaatttggtttct 46691970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 2593599 - 2593560
Alignment:
Q  84 gtgctcataatttgtttgtttgatgagtcaggtgctcaca 123  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2593599 gtgctcataatttgtttgtttgatgagtcaagtgctcaca 2593560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 50295554 - 50295586
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcaca 339  Q
    |||||||||||||| ||||||||||||||||||    
T  50295554 caatttggttgtttcgtgagtcgagtgctcaca 50295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 15629990 - 15629922
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttctgattgca 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  15629990 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc-ccttatgattcttctgattgca 15629922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 2072519 - 2072369
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 110  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||| |  ||| |||| | ||||||| |  |||||| |||||| ||||||||||||    
T  2072519 ttcaatttgtttagttgttgggtgagtcaagatagggctcaccattggtttgattgtttggtgggtgggtgat-tgctcacaatttgattgtttgatgag 2072421  T
Q  111 tcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 162  Q
    ||  ||||||| ||||| |||||||||||| ||| || |||||| |||||||    
T  2072420 tcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtt 2072369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 15630081 - 15630022
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15630081 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc-ccttttgattcttc 15630022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 2076049 - 2075899
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 110  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||| |  ||| |||| | ||||||| |  |||||| |||||| |||||||| |||    
T  2076049 ttcaatttgtttagttgttgggtgagtcaagatagggctcaccattggtttaattgtttggtgggtgggtgat-tgctcacaatttggttgtttgacgag 2075951  T
Q  111 tcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 162  Q
    ||  ||||||| ||||| |||||||||||| ||| || |||||| |||||||    
T  2075950 tcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtt 2075899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 252 - 328
Target Start/End: Complemental strand, 15630076 - 15630001
Alignment:
Q  252 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 328  Q
    |||||||||| ||  |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  15630076 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttagtgagtc 15630001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 15630019 - 15629924
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattg 250  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||||||   ||||||||||||||||||||   |||||| |||||||| ||||||    
T  15630019 tttggttgtttagtgagtctaattctcacattt-ggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttatgattcttctgattg 15629924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 15630107 - 15630023
Alignment:
Q  161 ttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 243  Q
    |||||||||||||| ||| |||||| ||||||||||||||||||   ||||||||||||||||||||   |||||||||||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattctt 15630023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 19825164 - 19825091
Alignment:
Q  146 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatt 219  Q
    ||||||||| ||||||||||||| ||||| ||| |||||| |||||||||||||||||||  ||||||||||||    
T  19825164 gtgctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaagtgctcacaatt 19825091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 2072446 - 2072364
Alignment:
Q  147 tgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctcc 229  Q
    |||||||| |||| ||||||| |||||| ||| |||| | |||||||||||||||||||  || |||||||||||||||||||    
T  2072446 tgctcacaatttgattgtttgatgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttctcc 2072364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 2075976 - 2075894
Alignment:
Q  147 tgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctcc 229  Q
    |||||||| ||||||||||||  ||||| ||| |||| | |||||||||||||||||||  || |||||||||||||||||||    
T  2075976 tgctcacaatttggttgtttgacgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttctcc 2075894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 19825223 - 19825094
Alignment:
Q  26 gttgttaggtgagtcaagatagtgctcacaattggata--ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcaca 123  Q
    |||||| |||||||||||||| ||||||||||| | |   || |||| |||||| || ||||||||| |||||| |||||||  |||||  |||||||||    
T  19825223 gttgtttggtgagtcaagataatgctcacaatttgtttgtttgtttggttggtgagt-aagtgctcacaatttggttgtttggcgagtcgagtgctcaca 19825125  T
Q  124 ctttagttgtttggtgaattaggtgctcaca 154  Q
     ||| |||||||||||| ||| |||||||||    
T  19825124 atttggttgtttggtgagttaagtgctcaca 19825094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 19825157 - 19825117
Alignment:
Q  307 caatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  19825157 caatttggttgtttggcgagtcgagtgctcacaatttggtt 19825117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 15629835 - 15629796
Alignment:
Q  359 ttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  15629835 ttttgattcttctgattgcacttctccaacttttgatgat 15629796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 15630107 - 15630044
Alignment:
Q  130 ttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggtt 193  Q
    ||||||||||| |   ||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 15630108 - 15630044
Alignment:
Q  98 tttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 162  Q
    |||||||| ||||||  ||||||||||||| |||||||||||| |   ||||||||| |||||||    
T  15630108 tttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 347
Target Start/End: Complemental strand, 15630107 - 15630075
Alignment:
Q  315 ttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||||||||||||||||||||| |||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggtt 15630075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 20242015 - 20242093
Alignment:
Q  268 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  20242015 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 20242093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 20251052 - 20250974
Alignment:
Q  268 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 347  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  20251052 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 20250974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 20242107 - 20242177
Alignment:
Q  268 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 339  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  20242107 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttggtgagtagagttctcaca 20242177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 20241964 - 20242052
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 243  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20241964 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20242052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 20251103 - 20251015
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 243  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20251103 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20251015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 20241882 - 20242010
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 110  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  20241882 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 20241980  T
Q  111 tcaggtgctcacactttagttgtttggtga 140  Q
    ||  || |||||| ||| ||||||||||||    
T  20241981 tcgagttctcacattttggttgtttggtga 20242010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 20242056 - 20242144
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 243  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20242056 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20242144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 20251011 - 20250923
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 243  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20251011 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20250923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 20251185 - 20251057
Alignment:
Q  13 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 110  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  20251185 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 20251087  T
Q  111 tcaggtgctcacactttagttgtttggtga 140  Q
    ||  || |||||| ||| ||||||||||||    
T  20251086 tcgagttctcacattttggttgtttggtga 20251057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 20242177 - 20242238
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  20242177 atttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattcttc 20242238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 20242148 - 20242237
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 243  Q
    ||||||||||||||||||  |||||||||| ||||||||| ||||||||   ||||||||||||||||   ||||||||||||||||||||    
T  20242148 tttggttgtttggtgagtagagttctcaca-tttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattctt 20242237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 20242199 - 20242247
Alignment:
Q  268 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 316  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20242199 gtgctcacaatttggtttcttctcccccttttgattcttcaatttggtt 20242247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 20241995 - 20242053
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20241995 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20242053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 20242087 - 20242145
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20242087 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20242145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 20250980 - 20250922
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20250980 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20250922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 20251072 - 20251014
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  20251072 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattcttc 20251014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 20250960 - 20250913
Alignment:
Q  268 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 316  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  20250960 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtt 20250913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 20242331 - 20242361
Alignment:
Q  224 ttctcccccttttgattcttttgattgattg 254  Q
    |||||||||||||||||||||||||||||||    
T  20242331 ttctcccccttttgattcttttgattgattg 20242361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 254
Target Start/End: Complemental strand, 20250829 - 20250799
Alignment:
Q  224 ttctcccccttttgattcttttgattgattg 254  Q
    |||||||||||||||||||||||||||||||    
T  20250829 ttctcccccttttgattcttttgattgattg 20250799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 346
Target Start/End: Original strand, 21862276 - 21862371
Alignment:
Q  252 ttgtttggtgggtgaagtgctcataatttggtttcttctccccc-ttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggt 346  Q
    |||||||||| ||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||    
T  21862276 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattcttcaatttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 28063679 - 28063589
Alignment:
Q  247 attgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 339  Q
    |||| |||||||||| || | ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| ||||||    
T  28063679 attggttgtttggtgagtcaggtgctcacaatttggtttcttctccc--ttttgattcttcaatttggttgtttggtgagtctagttctcaca 28063589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 21862270 - 21862332
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctcc-ttttgattcttc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  21862270 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattcttc 21862332  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 13167536 - 13167597
Alignment:
Q  267 agtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 328  Q
    |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13167536 agtgctcacagtttggtttcttctcccccttctgattcttcaatttggttgtttggtgagtc 13167597  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 21862241 - 21862311
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 227  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||   ||||||||||||||||||||    
T  21862241 tttggttgtttggtgagtctagctctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtttct 21862311  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 21862043 - 21862137
Alignment:
Q  148 gctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattc 241  Q
    ||||||| |||| |||||||||||||| | ||||||||||||||||||||| ||||  | ||||||||||||||||||||   |||||||||||||    
T  21862043 gctcacaatttgcttgtttggtgagtcgaattctcacattttggttgtttgttgagcgt-gtgctcacaatttggtttcttctccccttttgattc 21862137  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 21862102 - 21862173
Alignment:
Q  268 gtgctcataatttggtttcttctcccccttttgattc-ttcaatttggttgtttggtgagtcgagtgctcaca 339  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||    
T  21862102 gtgctcacaatttggtttcttctcccc-ttttgattcgttcaatttggttgtttggtgagtctagttctcaca 21862173  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 21862144 - 21862213
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttc 226  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||  ||||||||||    
T  21862144 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgagtgctcaatatttggtttc 21862213  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 28063618 - 28063528
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct---cccccttttgattcttt 244  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||   | ||| ||||||| |||||   |||||||||||||||||    
T  28063618 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtaagttgaattctcccaatttgatttcttcacccccttttgattcttt 28063528  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 28063678 - 28063621
Alignment:
Q  311 ttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||    
T  28063678 ttggttgtttggtgagtcaggtgctcacaatttggtttcttctc--ccttttgattcttc 28063621  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 9291124 - 9291085
Alignment:
Q  359 ttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9291124 ttttgattcttctgattgcacttctcccacttttgatgat 9291085  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 13167527 - 13167576
Alignment:
Q  321 ggtgagtcgagtgctcacaatttggtttcttctcctccttttgattcttc 370  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  13167527 ggtgagtcgagtgctcacagtttggtttcttctcccccttctgattcttc 13167576  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 28063678 - 28063622
Alignment:
Q  188 ttggttgtttggtgagtttggtgctcacaatttggtttc-tcccccttttgattctt 243  Q
    |||||||||||||||||  |||||||||||||||||||| || ||||||||||||||    
T  28063678 ttggttgtttggtgagtcaggtgctcacaatttggtttcttctcccttttgattctt 28063622  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 21862179 - 21862259
Alignment:
Q  252 ttgtttggtgggtgaagtgctcataatttggtttcttctccccc----ttttgattcttcaatttggttgtttggtgagtc 328  Q
    |||||||||| ||  ||||||||  |||||||||| ||||||||    || ||||||||||||||||||||||||||||||    
T  21862179 ttgtttggtgagtcgagtgctcaatatttggtttcctctcccccccccttctgattcttcaatttggttgtttggtgagtc 21862259  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 13167445 - 13167502
Alignment:
Q  269 tgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagt 327  Q
    |||||| |||||||| |||||||||| ||||| ||||||||||||||||| ||||||||    
T  13167445 tgctcacaatttggtgtcttctcccc-ttttggttcttcaatttggttgtgtggtgagt 13167502  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 21862173 - 21862219
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 355  Q
    |||||||||||||||||||||||||||||  |||||||||| |||||    
T  21862173 atttggttgtttggtgagtcgagtgctcaatatttggtttcctctcc 21862219  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 21862082 - 21862137
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattc 367  Q
    |||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||    
T  21862082 tttggttgtttgttgag-cgtgtgctcacaatttggtttcttctcc-ccttttgattc 21862137  T

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Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 28063506 - 28063465
Alignment:
Q  357 ccttttgattcttctgattgcacttctcccacttttgatgat 398  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  28063506 ccttttgatccttctgattgcatttctcccacttttgatgat 28063465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 10741529 - 10741569
Alignment:
Q  310 tttggttgtttggtgagtcgagtgctcacaatttggtttct 350  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  10741529 tttggttgttcggtgagtcgagtactcacaatttggtttct 10741569  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 13167367 - 13167412
Alignment:
Q  67 tttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 112  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||    
T  13167367 tttgtttggtgggtcaagtgctcgcaatttgcttgtttggtgagtc 13167412  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 28063813 - 28063772
Alignment:
Q  19 ttgtttggttgttaggtgagtcaagatagtgctcacaattgg 60  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||    
T  28063813 ttgtttggttgttaggtgagttaagattgtgctcacatttgg 28063772  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 13097907 - 13097975
Alignment:
Q  68 ttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttg 136  Q
    ||||||| || ||| |||||||| || ||||||||||| |||| || ||||||||| ||| ||||||||    
T  13097907 ttgtttgatgagtcgagtgctcacaaattgtttgtttgttgagacaagtgctcacaatttggttgtttg 13097975  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 13167579 - 13167611
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattt 188  Q
    |||||||||||||||||||||||||| ||||||    
T  13167579 tttggttgtttggtgagtctagttcttacattt 13167611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 21862335 - 21862371
Alignment:
Q  156 tttggttgtttggtgagtctagttctcacattttggt 192  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  21862335 tttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 28063589 - 28063529
Alignment:
Q  309 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccttttgattctt 369  Q
    ||||||||||||||| ||| || | ||| ||||||| ||||||| || |||||||||||||    
T  28063589 atttggttgtttggtaagttgaattctcccaatttgatttcttcacccccttttgattctt 28063529  T

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Target: scaffold0499 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 7329 - 7233
Alignment:
Q  68 ttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttg 167  Q
    |||||||||| ||| |||||||| || ||| ||||||| |||| ||  |||||||| |||||||   |||||| | ||||||||||| ||||||||||||    
T  7329 ttgtttggtgagtcgagtgctcacaaattgattgtttgttgagacaaatgctcacaatttagtt---tggtgagtcaggtgctcacaatttggttgtttg 7233  T

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Target: scaffold0499; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 340
Target Start/End: Complemental strand, 7333 - 7304
Alignment:
Q  311 ttggttgtttggtgagtcgagtgctcacaa 340  Q
    ||||||||||||||||||||||||||||||    
T  7333 ttggttgtttggtgagtcgagtgctcacaa 7304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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