View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_19 (Length: 347)
Name: NF13200_high_19
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 347
Target Start/End: Complemental strand, 40351680 - 40351356
Alignment:
| Q |
7 |
tcgaagaatattgcattaattaaatatttcttcaaaagaaattgtatattgttaatgtgagtttcgcacgaatgaatggtacgggggtttttagagggtg |
106 |
Q |
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| T |
40351680 |
tcgaacaaaattgcattaattaaatatttcttcaaaagaaattgtatattgttaatgtgagtttcgcacgaatgaatagtacgggggaatttagagggtg |
40351581 |
T |
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| Q |
107 |
atatggaataaggcgtattgtttgattgaaataataaaatgtatgttttctaccacaaaataatcatgaattgcaagttttacatgttaaatgtttaaaa |
206 |
Q |
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| T |
40351580 |
gtatggaataaagcgtattggttggttgaaataataaaatgtatgttttctaccacaaaataatcatgaattgcaagttttacatgttaaatgtttaaaa |
40351481 |
T |
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| Q |
207 |
tataaaattcaaattacatgttcatttgtggatttctagtggcataagaatcattgtcagatgtaagtcaaatagattaaagaaggagggtgatgaagat |
306 |
Q |
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| T |
40351480 |
tataaaattcaaattacatgttcatttgtggatttctagtggcataa----------------tagatcaaatagattaaagaaagagaattataaagat |
40351397 |
T |
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| Q |
307 |
gatagagttatgggttcgagattattgatgtatttgagatt |
347 |
Q |
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| T |
40351396 |
gatagaattatgggttcgagattattgatgtatttaagatt |
40351356 |
T |
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