View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_2 (Length: 793)
Name: NF13200_high_2
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 219 - 697
Target Start/End: Complemental strand, 31406740 - 31406263
Alignment:
| Q |
219 |
tagaagttgaaataccttgttttcatatatcaattggccattattaactgttttggtgttgaaattgcagggtccaacatttggagcaatgatgatttca |
318 |
Q |
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| T |
31406740 |
tagaagttgaaataccttgttttcatatat-aattggccattattaactgttttggtgttgaaattgcagggtccaacatttggagcaatgatgatttca |
31406642 |
T |
|
| Q |
319 |
ggacagaaggcagctcatttggccttgagagcactgggacttccaaatgttgtggatcatgcaagaaatattcaccctgagcttgtcctagctgctgctg |
418 |
Q |
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| T |
31406641 |
ggacagaaggcagctcatttggccttgagagcactgggacttccaaatgctgtggatcatgcaggaaatattcaccctgagcttgtcctagctgctgctg |
31406542 |
T |
|
| Q |
419 |
attctgctgatattgcagaagcttaattattgttaccatattaactatttagttaatagtatcgaagtgctagtagccagaaataaaactttgtctttgt |
518 |
Q |
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| T |
31406541 |
attctgctgatattgcagaagcttaattattgttaccatattaactatttagttaatagtatcgaagtgctagtaaccagaaataaaactttgtctttgt |
31406442 |
T |
|
| Q |
519 |
tgtttgttagtcactattatgggcaggttgatgtgactctctatgagcttttttgtcattaatatgaatgaatgtgtttgccaactccttgcatttcttt |
618 |
Q |
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| T |
31406441 |
tgtttgttagtagtgattatgggcaggttgatgtgactctgtatgagcttttttgtcattaatatgaatgaatgtgtttgccaactccttgcatttcttt |
31406342 |
T |
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| Q |
619 |
ctcctccactaatatttatgattgttttttaatgaaaagggaatactattaaggggacagaattcccccaatcctccca |
697 |
Q |
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| T |
31406341 |
ctcctccactaatatttatgattgttttttaatgaaaagggaatactattaaggggacagaattcccccaatcctccca |
31406263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 31406977 - 31406777
Alignment:
| Q |
20 |
ggtccaaccccaaagtgggactgaataggaactcataatcatacctaatgagacaactctctttatcaaaaagtcgtggtcccagtttgctaaatttatg |
119 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31406977 |
ggtccaaccccaaagtgggacttaataggaattcataatcatacctaatgagacaactctctttatcaaaaagtcgtggtcccagtctgctaaatttatg |
31406878 |
T |
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| Q |
120 |
ttcagttgttcatggaatctttcttgtcctttctgcaattcttcttttgattattactttatttcatttggataaccaactgagattcatgtaatgcgct |
219 |
Q |
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| T |
31406877 |
ttcaattgttcatggaatctttcttgtcctttatgcaattcttcttttcattattacttta-ttcatttggataaccaactgagattcatgtaatgcgct |
31406779 |
T |
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| Q |
220 |
ag |
221 |
Q |
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|| |
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| T |
31406778 |
ag |
31406777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 695 - 783
Target Start/End: Complemental strand, 31405891 - 31405803
Alignment:
| Q |
695 |
ccaactggatatttctgcatcttagatagggtttcctactattttcctctatactagcacttgatcaaggccttcacatttggtctgtg |
783 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31405891 |
ccaactggatatttctgcatcttagatagggtttcctactattttcctctatactagcacttgatcaaggccttcacatttggtctgtg |
31405803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 47480653 - 47480594
Alignment:
| Q |
287 |
agggtccaacatttggagcaatgatgatttcaggacagaaggcagctcatttggccttga |
346 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||| || || |||||||| |||| |
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| T |
47480653 |
agggtccaacatttggggcaatgatgatatcaggacagaaagctgcacatttggcattga |
47480594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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