View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_28 (Length: 276)
Name: NF13200_high_28
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 48083257 - 48083010
Alignment:
| Q |
17 |
aatttctagccgccaatgtagccagagtttaaaatgactctcagtcagagttattcttcatcataactacagacaaacatggacatttatttttactacc |
116 |
Q |
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| T |
48083257 |
aatttctagccgccaatgtagccagagtttaaaatgactctcaatcagatttattcttcatcataactacagacaaacatggacatttatttttactacc |
48083158 |
T |
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| Q |
117 |
acttcttgacaatatactttcttaactcgtacatgtacactgactgaattaatgtaatttatcaaagttagcacatttttgttttgacaaggtatcatag |
216 |
Q |
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| T |
48083157 |
acttcttgacaatatacttgcttaactcgtacatgtacactgactgaattaatgtaatttatcaaagttagcacatttttgtttggacaaggtatcaaag |
48083058 |
T |
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| Q |
217 |
ttaccatgatcaaataatgcaactagc----ttcatcaagaagtacat |
260 |
Q |
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| T |
48083057 |
ttaccatgatcaaataatgcaactagctaggttcatcaagaagtacat |
48083010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 48065851 - 48065786
Alignment:
| Q |
17 |
aatttctagccgccaatgtagccagagtttaaaatgactctcagtcagagttattcttcatcataa |
82 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48065851 |
aatttctagccgccaatgtagccagagtttaaaatgactctcagtcagatttattcttcatcataa |
48065786 |
T |
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