View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13200_high_30 (Length: 274)

Name: NF13200_high_30
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13200_high_30
NF13200_high_30
[»] chr5 (4 HSPs)
chr5 (13-258)||(2563013-2563276)
chr5 (190-258)||(2572996-2573064)
chr5 (61-107)||(465908-465954)
chr5 (143-179)||(11715018-11715054)
[»] chr7 (3 HSPs)
chr7 (58-104)||(28613601-28613647)
chr7 (58-107)||(34083592-34083641)
chr7 (35-107)||(42656469-42656539)
[»] chr8 (1 HSPs)
chr8 (58-107)||(7646160-7646209)
[»] chr2 (2 HSPs)
chr2 (62-107)||(36114594-36114639)
chr2 (65-107)||(3611180-3611222)
[»] chr1 (4 HSPs)
chr1 (58-107)||(34619445-34619494)
chr1 (58-107)||(9572175-9572224)
chr1 (58-107)||(38578481-38578530)
chr1 (57-105)||(37841954-37842002)
[»] chr6 (5 HSPs)
chr6 (59-107)||(507174-507222)
chr6 (60-104)||(28621179-28621223)
chr6 (58-107)||(769093-769142)
chr6 (58-107)||(9093623-9093672)
chr6 (58-106)||(2735024-2735072)
[»] chr4 (3 HSPs)
chr4 (63-107)||(17884022-17884066)
chr4 (61-107)||(47800584-47800630)
chr4 (58-107)||(47119032-47119081)
[»] chr3 (4 HSPs)
chr3 (61-107)||(42808933-42808979)
chr3 (58-107)||(30956693-30956742)
chr3 (58-107)||(30972505-30972554)
chr3 (58-107)||(32095258-32095307)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 2563276 - 2563013
Alignment:
Q  13 aaaattatgacatgttcataagttattttcatagactctccaagata------------------tagcttatacaaaaacaattgaactttgttttacc 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||| ||||||||    
T  2563276 aaaattatgacatgttcataagttattttcatagactctccaagatagcttgtgaaaatagtttatagcttatacaaaaacaattgaacttcgttttacc 2563177  T
Q  95 ttttgttatagaatacgctaatatgcttatcatgataaacgttgatgcataagctgcgaattaagttgtttatccatacagggtcatagaaacatacctg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2563176 ttttgttatagaatacgctaatatgcttatcatgataaacgttgatgcataagctgcgaattaagttgtttatccatacagggtcatagaaacatacctg 2563077  T
Q  195 tgtgaagagcgtgattggagaagtgtgagattgaagtatgtaatttgtaccccaacgaatagca 258  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2563076 tgtgaagagcgtgattggagaagtgtgagattgaagtatgaaatttgtaccccaacgaatagca 2563013  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 2573064 - 2572996
Alignment:
Q  190 acctgtgtgaagagcgtgattggagaagtgtgagattgaagtatgtaatttgtaccccaacgaatagca 258  Q
    |||||||| ||||||||| |||| |||||||||| || ||||||| ||| || ||||||||||||||||    
T  2573064 acctgtgtaaagagcgtggttggggaagtgtgagctttaagtatgaaatctgcaccccaacgaatagca 2572996  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 465954 - 465908
Alignment:
Q  61 agcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    ||||||||||||||||||| |||||| ||||| ||||||| ||||||    
T  465954 agcttatacaaaaacaatttaactttattttatcttttgtcatagaa 465908  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 11715018 - 11715054
Alignment:
Q  143 ataagctgcgaattaagttgtttatccatacagggtc 179  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  11715018 ataagctgcaaattaagttgtttatccaaacagggtc 11715054  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 28613601 - 28613647
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttata 104  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||||    
T  28613601 tataacttatacaaaaacaatttaactttgttttatcttttgttata 28613647  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 34083592 - 34083641
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    ||||||||||||| |||||||| |||||| ||||| |||||| |||||||    
T  34083592 tatagcttatacacaaacaatttaactttattttatcttttgctatagaa 34083641  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 42656539 - 42656469
Alignment:
Q  35 ttattttcatagactctccaagatatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    |||||||||||  ||||||||||||  |||||||||||||  |||  ||||| ||||| ||||||||||||||    
T  42656539 ttattttcataagctctccaagata--gcttatacaaaaatgatttgactttattttatcttttgttatagaa 42656469  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 7646209 - 7646160
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    ||||| |||||||||||||||| |||||| ||||||||||| ||||||||    
T  7646209 tatagattatacaaaaacaatttaactttattttaccttttcttatagaa 7646160  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 36114594 - 36114639
Alignment:
Q  62 gcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||||    
T  36114594 gcttatacaaaaacaatttaactttattttatcttttgttatagaa 36114639  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 3611222 - 3611180
Alignment:
Q  65 tatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    ||||||||||||||| |||||| |||||||||||| |||||||    
T  3611222 tatacaaaaacaatttaactttattttaccttttgctatagaa 3611180  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 34619445 - 34619494
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    |||||||||||||||||||||| ||| || ||||| ||||||||||||||    
T  34619445 tatagcttatacaaaaacaatttaaccttattttatcttttgttatagaa 34619494  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 9572175 - 9572224
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    |||||||||||||||| ||||| |||||| ||||| |||||| |||||||    
T  9572175 tatagcttatacaaaagcaatttaactttattttatcttttgctatagaa 9572224  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 38578530 - 38578481
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    ||||||||||||||||| |||| |||||| | ||| ||||||||||||||    
T  38578530 tatagcttatacaaaaataatttaactttatgttatcttttgttatagaa 38578481  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 37842002 - 37841954
Alignment:
Q  57 atatagcttatacaaaaacaattgaactttgttttaccttttgttatag 105  Q
    ||||||||||||| ||||||||| |||||| ||||| | ||||||||||    
T  37842002 atatagcttatacgaaaacaatttaactttattttatcatttgttatag 37841954  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 507222 - 507174
Alignment:
Q  59 atagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    ||||||||||||||||||||  |||||| ||||| ||||||||||||||    
T  507222 atagcttatacaaaaacaatctaactttattttatcttttgttatagaa 507174  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 28621179 - 28621223
Alignment:
Q  60 tagcttatacaaaaacaattgaactttgttttaccttttgttata 104  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||    
T  28621179 tagcttatacaaaaacaatttaactttattttatcttttgttata 28621223  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 769142 - 769093
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    ||||||||||||||||| || | |||||| ||||| ||||||||||||||    
T  769142 tatagcttatacaaaaaaaaattaactttattttagcttttgttatagaa 769093  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 9093623 - 9093672
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    |||||||||||| ||||||||| |||||| ||||| |||||| |||||||    
T  9093623 tatagcttatacgaaaacaatttaactttattttatcttttgatatagaa 9093672  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 2735072 - 2735024
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttataga 106  Q
    ||||| ||||||||||| |||| |||||| ||||| |||||||||||||    
T  2735072 tatagattatacaaaaataatttaactttattttatcttttgttataga 2735024  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 17884066 - 17884022
Alignment:
Q  63 cttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||    
T  17884066 cttatacaaaaacaatttaactttattttatcttttgttatagaa 17884022  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 47800630 - 47800584
Alignment:
Q  61 agcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    |||||||||||||||| || |||||| ||||| ||||||||||||||    
T  47800630 agcttatacaaaaacattttaactttattttatcttttgttatagaa 47800584  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 47119032 - 47119081
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    |||||||||||  ||||||||| |||||||||||| |||||| |||||||    
T  47119032 tatagcttatatgaaaacaatttaactttgttttatcttttgatatagaa 47119081  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 42808979 - 42808933
Alignment:
Q  61 agcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    |||||||| |||||||||| |||||| ||||| ||||||||||||||    
T  42808979 agcttatataaaaacaatttaactttattttatcttttgttatagaa 42808933  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 30956693 - 30956742
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    |||||| ||||||||||||||| |||||| ||||| |||||| |||||||    
T  30956693 tatagcctatacaaaaacaatttaactttattttatcttttgctatagaa 30956742  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 30972505 - 30972554
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    |||||| ||||||||||||||| |||||| ||||| |||||| |||||||    
T  30972505 tatagcctatacaaaaacaatttaactttattttatcttttgctatagaa 30972554  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 32095258 - 32095307
Alignment:
Q  58 tatagcttatacaaaaacaattgaactttgttttaccttttgttatagaa 107  Q
    ||||| |||||||||||||||| |||||  ||||| ||||||||||||||    
T  32095258 tatagtttatacaaaaacaatttaacttaattttatcttttgttatagaa 32095307  T

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