View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13200_high_31 (Length: 271)
Name: NF13200_high_31
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 21937404 - 21937152
Alignment:
| Q |
13 |
aatattatttggacacgcgaaacgggacatatgagctaataagtcaaataaatctatttttgttttatgagttataaatatgtgttataagttcgaaaat |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21937404 |
aatattatttggacacacgaaacgggacatatgagctaataagtcaaataaatctatttttgttttatgagttataaatatgtgttataagctcgaaaat |
21937305 |
T |
|
| Q |
113 |
tgactttgtcaaacaagctctaaataaatgatgttgacgttgtattgtgtggaaaaattatttttcttactctaatctcttctaacttaacaaagatttt |
212 |
Q |
| |
|
| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
21937304 |
taactttctcaaacaacctctaaatatatgatgttgacgttgtattgtgtggaaaaaatattttccttactctaatctcttataacttaacaaagatttt |
21937205 |
T |
|
| Q |
213 |
aaattcaaactcgagttttagacatgtagaaacgttaaaatcgttaaaaagaa |
265 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
21937204 |
aaattcaaacttgaattttaaacatgtagaaacgttaaaattgttaagaagaa |
21937152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University