View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_4 (Length: 674)
Name: NF13200_high_4
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 4554577 - 4554915
Alignment:
| Q |
1 |
ttaaaaagcagcctgcctttgatcatcctgcattgaaaaatcacaaaattcaggtgaatgttcttcatgtgattccnnnnnnnnnnnnnnnnnacaatac |
100 |
Q |
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| T |
4554577 |
ttaaaaaacagcctgcctttgatcatcctgcattgaaaaatcacaaaattcaggtgaatgttcttcatgtgattcctttttttttttttttt-acaatac |
4554675 |
T |
|
| Q |
101 |
ttttgtgttaatttatagatgatacactagttgcttgtttgggctttcttttgtgaaagatcaatgtgattttaaaagtatgaaattaatttttacattc |
200 |
Q |
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| T |
4554676 |
ttttgtgttaatttatagatgatacactagttgcttgtttgggctttcttttgtgaaagatcaatgtgattttaaaagtatgaaattaatttttacattc |
4554775 |
T |
|
| Q |
201 |
tattttgtaaccatgtaattggtgcgaagtatccacggacttgtaccgattactaatctccgcatggaacttgcctggccaactttgacatgtttaagtg |
300 |
Q |
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| T |
4554776 |
tattttgtaaccatgtaattggtgcgaagtatccacggacttgtaccgattactaatctccgcatggaacttgcctggccagctttgacatgtttaagtg |
4554875 |
T |
|
| Q |
301 |
ttcttgagtaaattgctttggacatccaaagtttattcta |
340 |
Q |
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| T |
4554876 |
ttcttgagtaaattgctttggacatccaaagtttattcta |
4554915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 416 - 662
Target Start/End: Original strand, 4555003 - 4555249
Alignment:
| Q |
416 |
tgaacataagtaaataattttacactcaattcatttttaatcaaaatactttcgtcaaaatcaatttttgcccctgcaaaacaaaacacactaattagta |
515 |
Q |
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| T |
4555003 |
tgaacataagtaaataattttacactcaactcatttttaatcaaaatactttcgtcaaaatcaatttttgcccctgcaaaacaaaacacactaattagta |
4555102 |
T |
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| Q |
516 |
attactacatgttttcttattgccaaatcactaatactactctatgaatcttcatataaatatgtaatcagatggctcccagttacaattcagttaagaa |
615 |
Q |
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| T |
4555103 |
attactacatgttttcttattgccaaatcactaatactactctatgaatcttcatataaatatgtaatcagatggctcccagttacaattcagttaagaa |
4555202 |
T |
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| Q |
616 |
ggacaccacagtaagcactagtaataaaactaagagtgccatgatga |
662 |
Q |
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| T |
4555203 |
ggacaccacagtaagcactagtaataaaactaagagtgccatgatga |
4555249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 43052348 - 43052389
Alignment:
| Q |
201 |
tattttgtaaccatgtaattggtgcgaagtatccacggactt |
242 |
Q |
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| T |
43052348 |
tatttggtaaccatgtcattggtgcgaagtatccactgactt |
43052389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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