View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_44 (Length: 235)
Name: NF13200_high_44
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 8393028 - 8393208
Alignment:
| Q |
17 |
aaaatagttgaaggtgaacctattacagaaataaatatcaaatggtgtctttattggccatgacaatagcatacctgagacaagagtgaatctatttcat |
116 |
Q |
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| T |
8393028 |
aaaatagttgaaggtgaacctattacagaaataaatatcaaatggtgtctttattggccatgacaatagcatacctgagacaggagtgaatctatttcat |
8393127 |
T |
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| Q |
117 |
c-nnnnnnnttactgctggctaacgacaactggctactgcaaagagggctgttactagcttttcaccttcaccaaactgta |
196 |
Q |
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| T |
8393128 |
caaaaaaaattactgctggctgacgacaactggctactgcaaagagggctgttactagcttttcaccttcaccaaactgta |
8393208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 8398195 - 8398367
Alignment:
| Q |
30 |
gtgaacctattacagaaataaatatcaaatggtgtctttattggccatgacaatagcatacctgagacaagagtgaatctatttcatc-nnnnnnnttac |
128 |
Q |
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||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
8398195 |
gtgaacctattacagcaataaatattaaatggtgcctttattggccatgacaatagcatacctgagacaagagcgaatctatttcatcaacaaatattac |
8398294 |
T |
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| Q |
129 |
tgctggctaacgacaactggctactgcaaagagggctgttactagcttttcaccttcaccaaactgtaattat |
201 |
Q |
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| T |
8398295 |
tgctggctgacgacaactggccactccaaagagggctcttactagcttttcaccttcaccatactgtaattat |
8398367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 8408958 - 8408784
Alignment:
| Q |
21 |
tagttgaaggtgaacctattacagaaataaatatcaaatggtgtctttattggccatgacaatagcatacctgagacaagagtgaatctatttcatc-nn |
119 |
Q |
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| T |
8408958 |
tagttgaaggtgaacctattacagcaataaatat-taatgttgcctttattggccatgacattagcatacctgagac--gagtgaatctatttcatcaac |
8408862 |
T |
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| Q |
120 |
nnnnnttactgctggctaacgacaactggctactgcaaagagggctgttactagcttttcaccttcaccaaactgtaa |
197 |
Q |
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| |||||||||| |||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8408861 |
aaatataactgctggctgacgacaactggccactccaaatagggctgttactagcttttcaccttcaccaaactgtaa |
8408784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 8424164 - 8424047
Alignment:
| Q |
85 |
gcatacctgagacaagagtgaatctatttcatcnnnnnnn-ttactgctggctaacgacaactggctactgcaaagagggctgttactagcttttcacct |
183 |
Q |
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|||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||| ||| ||||||||||| | ||||||||||||||| |
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| T |
8424164 |
gcatacctgagacaagagcgagtctatttcatcaacaaaaattactgctggctgacgacaactggccactccaaagagggctctcactagcttttcacct |
8424065 |
T |
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| Q |
184 |
tcaccaaactgtaattat |
201 |
Q |
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||||||| || ||||||| |
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| T |
8424064 |
tcaccaatctataattat |
8424047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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