View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_46 (Length: 220)
Name: NF13200_high_46
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 35953671 - 35953485
Alignment:
| Q |
15 |
cacagagaactttgagcttgttggttttgtgtttccttgtgggaatgatgttagtgaatggtcagagtgcaaacaacgttagggcaacataccaccttta |
114 |
Q |
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| T |
35953671 |
cacagagaactttgagcttgttggttttgtgtttccttgtgggaacgatgttagtgaatggtcagagtgcaaacaacgttagggcaacataccaccttta |
35953572 |
T |
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| Q |
115 |
caaccctcagaatattaactgggactacaacactgccagtgtatactgtgctacctgggatgccaaccagcccttgtcatggcgtca |
201 |
Q |
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| T |
35953571 |
caaccctcagaatattaactggaactacaacactgccagtgtttactgtgctacatgggatgccaaccagcccttgtcatggcgtca |
35953485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 35940061 - 35939877
Alignment:
| Q |
15 |
cacagagaactttgagcttgttggttttgtgtttccttgtgggaatgatgttagtgaatggtcagagtgcaaacaacgttagggcaacataccaccttta |
114 |
Q |
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||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| | ||| |
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| T |
35940061 |
cacagagaaagttaagcttgttggtattgtgtttccttgtgggaacgatgttagtgagtggtcagagtgcaaacaacgtaagggcaacatacaataatta |
35939962 |
T |
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| Q |
115 |
caaccctcagaatattaactgggactacaacactgccagtgtatactgtgctacctgggatgccaaccagcccttgtcatggcgt |
199 |
Q |
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| T |
35939961 |
caaccctcagaatattaactgggactacaacactgccagtgtatactgtgctacctgggatgccaaccagcccttgtcatggcgt |
35939877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 35948133 - 35947949
Alignment:
| Q |
15 |
cacagagaactttgagcttgttggttttgtgtttccttgtgggaatgatgttagtgaatggtcagagtgcaaacaacgttagggcaacataccaccttta |
114 |
Q |
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||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||| || ||| |||| ||||||||||| |
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| T |
35948133 |
cacagagaaagttgagcttgttggtattttgtttccttgtgggaatgatgttagtgagtggtcagagtgcaaacggtgtaaggtcaacgtaccaccttta |
35948034 |
T |
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| Q |
115 |
caaccctcagaatattaactgggactacaacactgccagtgtatactgtgctacctgggatgccaaccagcccttgtcatggcgt |
199 |
Q |
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|||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
35948033 |
caaccctcagaatattaattgggattacaacagagccagtgtatactgtgctacctgggatgcaaaccagcccttggaatggcgt |
35947949 |
T |
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