View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_5 (Length: 620)
Name: NF13200_high_5
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 32 - 609
Target Start/End: Complemental strand, 39777303 - 39776737
Alignment:
| Q |
32 |
tactaagaattgcatgaacaaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcatnnnnnnngcaaagaattgattgaaaa |
131 |
Q |
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| T |
39777303 |
tactaagaattgcatgaacaaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcataaaaaaagcaaagaattgattgaaaa |
39777204 |
T |
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| Q |
132 |
aacagaaccaagtactagaattcattactctccatttaatgatcctatgattagtaagtttgatgtttgagtttgttgactaccttgtgtaacgaatagg |
231 |
Q |
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| T |
39777203 |
aacagaaccaagtactagaattcattactctccatttagt-----------tagtaagtttgatatttgagtttgttgactaccttgtgtaacgaatagg |
39777115 |
T |
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| Q |
232 |
aagcttcgccaatttgaatagcgacatcacttggaatctcctgggagtaattcctgtgataagtggttcaattcaaaggctttcagtaattttcatcata |
331 |
Q |
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| T |
39777114 |
aagcttcgccaatttgaatagcgacatcacttggaatctcctgggagtaattcctgtgataagtggttcaattcaaaggctttcagtaattttcatcata |
39777015 |
T |
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| Q |
332 |
tccaagaaaaagttaatattagcatcggcaaatgcatgttataagagttttagaaaaccagaagcataccattcacttgttctcttcatggcactaggaa |
431 |
Q |
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| T |
39777014 |
tccaagaaaaagttaatattagcatcggcaaatgcatgttataagagttttagaaaaccagaagcataccattcacttgttctcttcatggcactaggaa |
39776915 |
T |
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| Q |
432 |
tggctcctccttcccgcaaccacggagggttttatgtatccgagactgcaatgcgaccgtgattaaggctgtattgtattggctgcatttgatcgcaatt |
531 |
Q |
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| T |
39776914 |
tggctcctccttcccgcaaccacggagggttttatgtatccgagactgcaatgcgaccgtgattaaggctgtattgtattggctgcatttgatcgcaatt |
39776815 |
T |
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| Q |
532 |
ttctgcaatatatgtattttgtgctgagtggtgtgtgcttttatgagagtttgagtggaaaaagtaatgaatgatatt |
609 |
Q |
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| T |
39776814 |
ttctgcaatatatgtattttgtgctgagtggtgtgtgcttttatgagagtttgagtggaaaaagtaatgaatgatatt |
39776737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 1381263 - 1381228
Alignment:
| Q |
70 |
ctaaatagatcaaacgacatcataatgttgtatcat |
105 |
Q |
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| T |
1381263 |
ctaaatagatcaaacgacatcataatgttatatcat |
1381228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 51 - 247
Target Start/End: Original strand, 47798862 - 47799058
Alignment:
| Q |
51 |
aaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcatnnnnnnngcaaagaattgattgaaaaaacagaaccaagtactaga |
150 |
Q |
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|||| ||||| ||||||||||| ||||||||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||||| |||||| |
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| T |
47798862 |
aacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactaga |
47798961 |
T |
|
| Q |
151 |
attcattactctccatttaatgatcctatgattagtaagtttgatgtttgagtttgttgactaccttgtgtaacgaataggaagcttcgccaatttg |
247 |
Q |
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| T |
47798962 |
aatcattactctccatttaatgatattatgattagtaattttgatatttgaatttgttccctaccttgtgtaacgaataggaagcttcaccaatttg |
47799058 |
T |
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