View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_6 (Length: 566)
Name: NF13200_high_6
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 14 - 551
Target Start/End: Original strand, 33219060 - 33219597
Alignment:
| Q |
14 |
agagccatggaaaagtgcaaaagtcgcaactagcaatcttggaatcctcttccttgttttgcttatgtataatcctacatatggaatcacagtgtcctaa |
113 |
Q |
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| T |
33219060 |
agagccatggaaaagtgcaaaagtcgcaactagcaatcttggaatcctcttctttgttttgcttatgtataatcctacatatggaatcatagtgtcctaa |
33219159 |
T |
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| Q |
114 |
aatattgtcaagaactcaagatatgcttgttgttgacaattaaggtttcttaggtttgttaataaggctaaagctatgtaaattatgtttttcattagca |
213 |
Q |
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| T |
33219160 |
aatattgtcaagaactcaagatatgcttgttgttgacaattaaggtttcttaggtttgttaataaggctaaagctatgtaaattatgtttttcattagca |
33219259 |
T |
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| Q |
214 |
aattttgctttctatctgtttgaaa-ttaatgttagagatagagattggaatcaaatgcatctgaattataggatgatcactagttgcattgtcatacat |
312 |
Q |
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| T |
33219260 |
aattttgctttctctctgtttgaaaattaatgttagagatagagattggaatcaaatgcatctgaattataggatgatcactagttgcattgtcatgcat |
33219359 |
T |
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| Q |
313 |
tataacctgagatgttatgttgctatatatggttggatatgtgcgcttaatcgtctaatgagactatgattaaacaatctaacaaagtaagggcaaaatg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||| |
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| T |
33219360 |
tataacctgagatgttatgttgctatatatggttggatatgtgcgcttaatcctctaatgagattatgattaaacaacctaataaagtaagggcaaaatg |
33219459 |
T |
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| Q |
413 |
cctcatcagatataaatttattttctatagaaaacaaatcttctacggttacaagactatggttacaagccttaggcatacttnnnnnnnngtgataagt |
512 |
Q |
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| T |
33219460 |
cctcatcagatataaatttattttctatagaaaacaagtcttctacggttacaagactatggttacaagccttaggcatactt-aaaaatagtgataagt |
33219558 |
T |
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| Q |
513 |
agaattttttgaatagttttttaactaattaaaagaata |
551 |
Q |
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| T |
33219559 |
agaattttatgaatagttttttaactaattaaaagaata |
33219597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 6169577 - 6169629
Alignment:
| Q |
60 |
ctcttccttgttttgcttatgtataatcctacatatggaatcacagtgtccta |
112 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
6169577 |
ctcttccttgctttgcttatgtataatcttacatatggaatcatagtgtccta |
6169629 |
T |
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