View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_8 (Length: 508)
Name: NF13200_high_8
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Complemental strand, 38520 - 38043
Alignment:
| Q |
13 |
catcaagttaaagtgtacatgacacataaaacaaaaccattgaagcttcaactcaatgaaactcagtttatctaaaaacgcaatattcacaaacacacaa |
112 |
Q |
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| T |
38520 |
catcaagttaaagtgtacatgacacataaaacaaaaacattgaagcttcaactcaatgaaactcagtttatctaaaaacgcaatattcacaaacacacaa |
38421 |
T |
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| Q |
113 |
aagcaatgaatgatgtgtaaccgaaaaccatgaaaggtagaacataagtaaacagaacaacacatatattcacatgatttcaatagtaacaagtataaac |
212 |
Q |
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| T |
38420 |
aagcaatgaatgatgtgtaaccgaaaaccatgaaaggtagaacataagtaaacagaacaacacatatattcacatgatttcaataggaacaagtataaac |
38321 |
T |
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| Q |
213 |
attaaacacatacttagagacatatcaacacatatattggtattgaatagttatcatatattagcatttaaggacatattgttgatcatataattaggca |
312 |
Q |
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| T |
38320 |
attaaacacatacttagagacatatcaacacatatatcggtattgaatagttatcatatattagcatttaagaacatattgttgatcatataattaggca |
38221 |
T |
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| Q |
313 |
tataaatagttcaccacgatacttgaagacaaaactcactcacacaatgacacccatgttctctcttgatatttctcagacatttagactcttaacaaga |
412 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38220 |
tataaatagttcaccacgatatttgaagacaaaactcactcacacaatgacactcatgttctctattgatatttctcagacatttagactcttaacaaga |
38121 |
T |
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| Q |
413 |
ctcaacacaatgaaatttgtaaggttaaagataatatgatcaataacctttctcctcctcttcatgatttagagttaa |
490 |
Q |
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| T |
38120 |
ctcaacacaatgaaatttgtaaggttaaagataatatgatcaataacctttctcctcctcttcatgatttagagttaa |
38043 |
T |
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