View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_high_9 (Length: 498)
Name: NF13200_high_9
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 54147027 - 54147373
Alignment:
| Q |
16 |
tttatttggctgttctaattgttctgtcaacatttgggaaatttgtgagtgttcgtgattaggcttttctttgttctagtcaatccttttgttcgtccat |
115 |
Q |
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| T |
54147027 |
tttatttggctgttctaattgttctgtcaacatttgggaaatttgtgagtgttcgtaattaggcttttctttgttctagtcaatccttttgttcgtccat |
54147126 |
T |
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| Q |
116 |
gactattcaatatggtttgtttcttctttttctcatttaatttgctggtcaaaattagttcctattggttgattagcatgttgcttttttgttttgattg |
215 |
Q |
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| T |
54147127 |
gactattcaatatggtttgtttcttctttttctcatttaatttgctggtcaaaattagttcctattggttgattagcatgttgc--ttttgttttgattg |
54147224 |
T |
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| Q |
216 |
ggagaccgataaatttctaatggtgaaggtagtgtacctaagcataaattggttttttggtgcttgggagttagtaggcttcattgttgtgataacatgg |
315 |
Q |
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| T |
54147225 |
ggagaccgataaatttataatggtgaaggtagtgtacctaagcataaattggttttttagtgcttgggagttagtaggcttcattgttgtgataacatgg |
54147324 |
T |
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| Q |
316 |
cattggtaactagtcttctcaatgtctgcaaaattgtgttggtctatga |
364 |
Q |
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| T |
54147325 |
cattggtaactagtcttctcaatgtctacaaaattgtgttggtctatga |
54147373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 24487524 - 24487454
Alignment:
| Q |
282 |
ggagttagtaggcttcattgttgtgataacatggcattggtaactagtcttctcaatgtctgcaaaattgt |
352 |
Q |
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| T |
24487524 |
ggagttagtaggcttctttgttgtggcaacatgatatttgtatctagtcttctcgttgtctgtaaaattgt |
24487454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 24487600 - 24487555
Alignment:
| Q |
202 |
ttttgttttgattgggagaccgata-aatttctaatggtgaaggta |
246 |
Q |
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| T |
24487600 |
ttttgttttgattgggagaccgatagaatatctagtggtgaaggta |
24487555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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