View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_16 (Length: 419)
Name: NF13200_low_16
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 34817737 - 34817353
Alignment:
| Q |
1 |
acaactaattcacacattcgttcattcacattttgaattttcactacaaccaattttcttcaccttgtaacaacaaattcaaatttctcataacattttc |
100 |
Q |
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| T |
34817737 |
acaactaattcacacattcgttcattcacattttgaattttcactacaaccaattttcttcaccttgtaacaacaaattcaaatttctcataacattttc |
34817638 |
T |
|
| Q |
101 |
atcttctccatagtttctagaagaaataaacaatgttctattcacaccagcttctagctcgcaaagcacctctcggtcaaatttggtatcaatctcacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34817637 |
atcttctccatagtttctagaagaaataaacaatgttctattcacaccagcttctagctcgcaaagcacctctcggtcaaatttggtatcaatctcacat |
34817538 |
T |
|
| Q |
201 |
ttcatattcattttcatttgcatcttcatctctctgtttttgcgnnnnnnncaatgttactaaaatgaggatcggaatcgattttttgtttgaaggatgg |
300 |
Q |
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| T |
34817537 |
ttcatat------------------tcatctctctgtttttgcgtttttttcaatgttactaaaatgaggatcggaatcgattttttgtttgaaggatgg |
34817456 |
T |
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| Q |
301 |
cggcaacgatgcacgctaagatcaacaggaagaagttgaataagctcaatatcatcaaaatctggtaactataatcgattattcacattcttcttctaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34817455 |
cggcaacgatgcacgctaagatcaacaggaagaagttgaataagctcaatatcatcaaaatctggtaactataatctattattcacattcttcttctaac |
34817356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 252 - 368
Target Start/End: Complemental strand, 35867564 - 35867449
Alignment:
| Q |
252 |
caatgttactaaaatgaggatcggaatcgattttttgtttgaaggatggcggcaacgatgcacgctaagatcaacaggaagaagttgaataagctcaata |
351 |
Q |
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|||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35867564 |
caatgttactaaaatgagaaccggaatcg-ttttttggttgaaggatggcggcaacgatgcacgccaagatcaacaggaagaagttgaataagctcaata |
35867466 |
T |
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| Q |
352 |
tcatcaaaatctggtaa |
368 |
Q |
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||||||||||||||||| |
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| T |
35867465 |
tcatcaaaatctggtaa |
35867449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 35867805 - 35867676
Alignment:
| Q |
53 |
attttcttcaccttgtaacaacaaattcaaatttctcataacattttcatcttctccatagtttctagaagaaataaacaatgttctattcacaccagct |
152 |
Q |
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|||||||||||||| |||||||| |||||||||||| |||| ||||| ||| ||||| | ||||| |||||||||| || ||||| ||||| |
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| T |
35867805 |
attttcttcaccttataacaacacattcaaatttctttgaacaatttcaaaatcttcatagct------agaaacaaacaatgttttactcacatcagct |
35867712 |
T |
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| Q |
153 |
tctagctcgcaaagcacctctcggtcaaatttggta |
188 |
Q |
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||| ||| | |||||||||||||||||||||||||| |
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| T |
35867711 |
tcttgctagaaaagcacctctcggtcaaatttggta |
35867676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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