View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_20 (Length: 362)
Name: NF13200_low_20
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 15135751 - 15135403
Alignment:
| Q |
1 |
ttatttagagtgagatctaaatcaacactccatgttctatcttgatcaacaaaaaggatagcatttccttcttccatcatgtgcatatgtgtcttcacaa |
100 |
Q |
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| T |
15135751 |
ttatttagagtgagatccaaatcaacattccatgttctatcttgatcaacaaaaaggatagcatttccttcttccatcatgtgcatatgtgtcttcacaa |
15135652 |
T |
|
| Q |
101 |
attcatttggtatcacctgttttagaacaaacataaaatgactaaa-tggatgcataagacatatcattggatgatttaattagtatgctatataacttt |
199 |
Q |
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| T |
15135651 |
attcagttggtatcacctgttttagaacaaacataaaatgactaaaatggatgcataagacatatcattggatgatttaattagtatgctatataacttt |
15135552 |
T |
|
| Q |
200 |
tttacctacgcaaccaatcaaaattcatctaggtattttcgtcgacgttttaaataatataacaaaaacccgttaccgtactgtgcttgaaataagcata |
299 |
Q |
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| T |
15135551 |
tttacctacgcaaccaatcaaaattcatctaggtattttcgtcgatgttttaaataatataacaaaaacccgttatcgtaatgtgcttgaaataaccaca |
15135452 |
T |
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| Q |
300 |
gtaagaatattcagcttgagaagaagctaagtgattagggttttaggtc |
348 |
Q |
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| T |
15135451 |
gtaagaatattcagcttgagaagaagctaagtgattagggttttaggtc |
15135403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 49744088 - 49743963
Alignment:
| Q |
1 |
ttatttagagtgagatctaaatcaacactccatgttctatcttgatcaacaaaaaggatagcatttccttcttccatcatgtgcatatgtgtcttcacaa |
100 |
Q |
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||||||| |||||||| |||||| || |||||| ||| ||||||||||||||||| || ||||| | |||||||| |||||| |||| |||| ||| |
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| T |
49744088 |
ttatttaaagtgagattcaaatcagcattccatggtctgtcttgatcaacaaaaagagtaatatttcttccttccatcctgtgcagatgtttcttagcaa |
49743989 |
T |
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| Q |
101 |
attcatttggtatcacctgttttaga |
126 |
Q |
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| T |
49743988 |
attcaattggtatgccctattttaga |
49743963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 12965515 - 12965567
Alignment:
| Q |
71 |
cttccatcatgtgcatatgtgtcttcacaaattcatttggtatcacctgtttt |
123 |
Q |
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| T |
12965515 |
cttccatcatgtccatatgtgccttaacaaattcatttggtatgacctgtttt |
12965567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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