View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_23 (Length: 335)
Name: NF13200_low_23
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 4461423 - 4461265
Alignment:
| Q |
11 |
agaatatcaaactcgtgaatataaggtttgtaatcagcttctaagagaaagacagtgcttcatcaacaaaatcactttgatccatcaaagtgaacactaa |
110 |
Q |
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| T |
4461423 |
agaagatcaaactcattaatacaaagcttgtaaccagcttctaagagaaataaagtgcttcatcaacaaaatcaatttgaaccatcagagtgaacacaaa |
4461324 |
T |
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| Q |
111 |
cgt--tacaacaaaaacacaactattttagttgtattgacaataatatcacagtagaaa |
167 |
Q |
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| T |
4461323 |
tgtcggcccaaataaacaaagctattttagttgcattgaaaataatatcacagtagaaa |
4461265 |
T |
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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 17478585 - 17478502
Alignment:
| Q |
235 |
atattaagtggtatactgtgcaa-aagatccaacttctaatttgtgtaatttatttcataaaaattggttaatttcacatcaaa |
317 |
Q |
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| T |
17478585 |
atattaagtggtgtattgtgcaataagataaaacttctaattcatgtaatctatttcataaaaattggttaatttcacatcaaa |
17478502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 4427146 - 4427203
Alignment:
| Q |
258 |
aagatccaacttctaatttgtgtaatttatttcataaaaattggttaatttcacatca |
315 |
Q |
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| T |
4427146 |
aagatgcaatttataatttttgtaatttatttcataaaaaatggtaattttcacatca |
4427203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 8366464 - 8366546
Alignment:
| Q |
236 |
tattaagtggtatactgtgcaa-aagatccaacttctaatttgtgtaatttatttcataaaaattggttaatttcacatcaaa |
317 |
Q |
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| T |
8366464 |
tattcagtggtgtactgttcaataagatgctacttctaatttatgtaatctattttataaaatttggttaatttcgcatcaaa |
8366546 |
T |
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