View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13200_low_24 (Length: 334)
Name: NF13200_low_24
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 40351326 - 40351124
Alignment:
| Q |
19 |
atgtgattcaacattttaaacatatatttgatgatgagtttaattttagaaatcaattctcatccaaactcatttctaaaagaaagttagcatctaccta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| ||||||| || |
|
|
| T |
40351326 |
atgtgattcaacattttaaacatatatttgataatgagtttaattttagaaacaaattttcatccaaactcaattctaaaagaaagttaacatctactta |
40351227 |
T |
|
| Q |
119 |
cgtgagaattgtttctaccccacaactatcattgtttaatattttattgaaacatgaatgttacctttaattatattatacgttatacatacacacatgt |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40351226 |
cgtaagaattgtttctaccccacaactatcattgtttaatattttattgaaacatgaatgttacctttaattatattatacgttatacatacacacatgt |
40351127 |
T |
|
| Q |
219 |
taa |
221 |
Q |
| |
|
||| |
|
|
| T |
40351126 |
taa |
40351124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 220 - 315
Target Start/End: Complemental strand, 40351075 - 40350978
Alignment:
| Q |
220 |
aagaatatttgacttttggattgaataattt--agttacactatacttatcttccggctattgaatttgatttatatggcccctttccctgagactca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
40351075 |
aagaatatttgacttttggattgaataatttttagttacactatacttatctttcggctactgaatttgatttgtatggccactttccctgagactca |
40350978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 40355802 - 40355718
Alignment:
| Q |
13 |
aagaatatgtgattcaacattttaaacatatatttgatgatgagtttaattttagaaatcaattctcatccaaactcatttctaa |
97 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||||| ||| | ||||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
40355802 |
aagaaaatgtgattcaacattttaaacatgtgtttgatgttgataatgattttagaaattaattctaatcaaaactcatttctaa |
40355718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University