View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13200_low_26 (Length: 313)

Name: NF13200_low_26
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13200_low_26
NF13200_low_26
[»] chr2 (1 HSPs)
chr2 (18-313)||(33183306-33183601)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 33183306 - 33183601
Alignment:
Q  18 caaatagtaataaaaatgttctttttcttctttctcagcaagtagttcataggtgcaatttatttccattcttctacttaagtctatggttttgttaagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33183306 caaatagtaataaaaatgttctttttcttctttctcagcaagtagttcataggtgcaatttatttccattcttctacttaagtctatggttttgttaagt 33183405  T
Q  118 caatactcaacacgcgtgaaaaacagctaattagtggcaatgcaaaaataaccaaataaaatgaaagtcaagtcaaccccaattgcattacatgtagagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33183406 caatactcaacacgcgtgaaaaacagctaattagtggcaatgcaaaaataaccaaataaaatgaaagtcaagtcaaccccaattgcattacatgtagagg 33183505  T
Q  218 tcaatcaaataaatactatagggatcaaatgaattaatgcttatgtatatgtaaattttggacatgcatgtgtagaagccgcaatgtacaccgtga 313  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33183506 tcaatcaaataaatactacagggatcaaatgaattaatgcttatgtatatgtaaattttggacatgcatgtgtagaagccgcaatgtacaccgtga 33183601  T

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