View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_27 (Length: 304)
Name: NF13200_low_27
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 4554277 - 4554552
Alignment:
| Q |
19 |
aatattcatgctcttggtgctttgcattacagtttatggtactaacaatgatgactcgttctcaagacagaaggttttggaagttgagaaaaaattacac |
118 |
Q |
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| T |
4554277 |
aatattcatgctcttggtgctttgcattacagtttatggtactaacaatgatgactcgttctcaagacagaaggttttggaagttgagaaaaaattacag |
4554376 |
T |
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| Q |
119 |
catcttagaaaacactcgttaaaaaccattaaggtaaaaagttttctttggtatactagacaatatcttacactgttgaatgttgtgtgagatttgatat |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4554377 |
catcttagaaaacactcattaaaaaccattaaggtaaaaagttttctttggtatactagacaatatcttacactgttgaatgttgtgttagatttgatat |
4554476 |
T |
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| Q |
219 |
tgtttacattttctaaattgtcacacaaggtgctaagcttaattataannnnnnncatgcttgtagagtgatgatg |
294 |
Q |
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| T |
4554477 |
tgtttagattttctaaattgtcacacaaggtgctaagcttaattataatttttttcatgcttgtagagtgaagatg |
4554552 |
T |
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