View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_3 (Length: 717)
Name: NF13200_low_3
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 19177820 - 19178148
Alignment:
| Q |
18 |
gattgcagatggcagaccctttaactgcattcatgtatgcagttcaagtgatgaactttttgaagacacttgtatcaatgacactgaaggaaaggaatga |
117 |
Q |
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| T |
19177820 |
gattgcagatggcagaccctttgactgcattcatgtatgcagttcaagtgatgaactttttgaagacacttgtatcaatgacactgaaggaaaggaatga |
19177919 |
T |
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| Q |
118 |
ttctgatgtagaatcatcacctgaattttatatagagccatttgatgagaatgaggaacatagtcattgtaactccttccagcaagatgttgcaacagaa |
217 |
Q |
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| T |
19177920 |
ttctgatgtagaatcatcacctgaattttatatagagccatttgatgagaatgaggaacatagtcattgtaactccttccagcaagatgttgcaacagaa |
19178019 |
T |
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| Q |
218 |
aatgaaatgctaggcaatgaagcaatttgagttgcatcgattcaagatcagtgtggatacgaagcctgtaaatg----nnnnnnnnnncaccattgtgct |
313 |
Q |
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| T |
19178020 |
aatgaaatgctaagcaatgaagcaatttgagttgcatcgattcaagatcagagtggataagaagcctggaaatgaaaaaaaaaaaaaacatcattgtgct |
19178119 |
T |
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| Q |
314 |
ggaatgtaaattgattcttttctggcatt |
342 |
Q |
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| T |
19178120 |
ggaatgtaaattgattcttttctggcatt |
19178148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 358 - 500
Target Start/End: Original strand, 19178237 - 19178379
Alignment:
| Q |
358 |
ttgtttgacttgtctgattttaagaaatggaagtatgatcaacattaacattgtaaagaaataaattcagagtactgaaggtgttgtgtatgtgtataag |
457 |
Q |
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| T |
19178237 |
ttgtttgacctgtctgattttaagaaatggaagtatgatcaacactagcattgtaaagaaataaattcagagtattgaaggtgttgtgtatgtgtatgag |
19178336 |
T |
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| Q |
458 |
tagcattgttatgaggtttatgctgtagaaaataaattcagat |
500 |
Q |
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| T |
19178337 |
ttgcattattctgaggtttatgctgtagaaaataaattcagat |
19178379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 581 - 708
Target Start/End: Original strand, 43128934 - 43129065
Alignment:
| Q |
581 |
aaataagtcaatctataccaccagggtaacgcttta-attttttcacgatct---cactctactgtttatatgagacagagtcaaaatataaagattcat |
676 |
Q |
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| T |
43128934 |
aaataagtcaatatattccaccaaggtaacgctttataatttttcacgatctgctcactctactgtttatatgaaacagagtcaaaatataaagatcctt |
43129033 |
T |
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| Q |
677 |
ggtgccaagcaatatatcaaatgtgatgatgt |
708 |
Q |
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| T |
43129034 |
ggtgacaaccaatatatcaaatgtgatgatgt |
43129065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 92 - 247
Target Start/End: Original strand, 27037555 - 27037710
Alignment:
| Q |
92 |
tcaatgacactgaaggaaaggaatgattctgatgtagaatcatcacctgaattttatatagagccatttgatgagaatgaggaacatagtcattgtaact |
191 |
Q |
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|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| |||| |
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| T |
27037555 |
tcaaggacactgaaggcaaggaatgattgtgatgtagaatcatcacctgaattttatatagagccttttgatgaaaatgaggaacatggtcatttgaact |
27037654 |
T |
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| Q |
192 |
ccttccagcaagatgttgcaacagaaaatgaaatgctaggcaatgaagcaatttga |
247 |
Q |
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| T |
27037655 |
cctgccagcaagatgttgcaactgaaaatgaaatgctaagcaatgaagcaatttga |
27037710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 27036797 - 27036868
Alignment:
| Q |
18 |
gattgcagatggcagaccctttaactgcattcatgtatgcagttcaagtgatgaactttttgaagacacttg |
89 |
Q |
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| T |
27036797 |
gattgcagatgttagaccctttgactgcattcatgtatgtagttcaagtgatgaactttttgaagacacttg |
27036868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 36407900 - 36407970
Alignment:
| Q |
18 |
gattgcagatggcagaccctttaactgcattcatgtatgcagttcaagtgatgaactttttgaagacactt |
88 |
Q |
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| T |
36407900 |
gattgcagatggcagatccattcactgcattgatgtacgcagttcaagtgatgaatttcttgaagacactt |
36407970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 9246670 - 9246608
Alignment:
| Q |
23 |
cagatggcagaccctttaactgcattcatgtatgcagttcaagtgatgaactttttgaagaca |
85 |
Q |
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| T |
9246670 |
cagatggcagaccccttaactgcattgattcatgcagtacaagttatgaacttcttaaagaca |
9246608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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