View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13200_low_30 (Length: 285)

Name: NF13200_low_30
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13200_low_30
NF13200_low_30
[»] chr6 (2 HSPs)
chr6 (1-272)||(29010863-29011122)
chr6 (124-277)||(28248943-28249095)
[»] chr5 (3 HSPs)
chr5 (32-279)||(14233896-14234144)
chr5 (32-190)||(31000575-31000733)
chr5 (83-125)||(40905518-40905560)
[»] chr4 (10 HSPs)
chr4 (123-279)||(9238300-9238456)
chr4 (36-276)||(9881073-9881316)
chr4 (123-272)||(26905116-26905265)
chr4 (140-277)||(5706952-5707089)
chr4 (3-83)||(32347607-32347686)
chr4 (1-72)||(28964837-28964908)
chr4 (123-219)||(50935447-50935542)
chr4 (1-82)||(11494105-11494187)
chr4 (32-67)||(7043414-7043449)
chr4 (84-125)||(28965279-28965320)
[»] chr3 (2 HSPs)
chr3 (2-175)||(1663200-1663381)
chr3 (140-277)||(18641184-18641321)
[»] chr2 (5 HSPs)
chr2 (124-285)||(302113-302273)
chr2 (1-125)||(12635117-12635241)
chr2 (159-277)||(3461568-3461686)
chr2 (127-277)||(38099360-38099510)
chr2 (123-276)||(39190845-39190997)
[»] chr8 (4 HSPs)
chr8 (124-277)||(37786822-37786974)
chr8 (134-279)||(6414383-6414528)
chr8 (3-72)||(9487816-9487884)
chr8 (1-80)||(26794293-26794373)
[»] chr1 (2 HSPs)
chr1 (1-130)||(51119415-51119547)
chr1 (159-285)||(50778359-50778485)
[»] scaffold0038 (1 HSPs)
scaffold0038 (124-277)||(49105-49257)
[»] chr7 (3 HSPs)
chr7 (140-285)||(30380427-30380571)
chr7 (159-285)||(35898384-35898510)
chr7 (123-279)||(296854-297010)
[»] scaffold1064 (1 HSPs)
scaffold1064 (123-261)||(2275-2413)
[»] scaffold0019 (1 HSPs)
scaffold0019 (3-68)||(59517-59581)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 29010863 - 29011122
Alignment:
Q  1 attacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaattttctaacaaattttctaactaacttgctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||    
T  29010863 attacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaa------------caaattttctaactaacttgctaa 29010950  T
Q  101 atggcaggtatggattaaatcttaatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagt 200  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||    
T  29010951 atggcagttatggattaaatcttaatactccatcttaattcataactgttgaatactgaaaacaccaagtttcttcctaaaaaacttaaatttgtcaagt 29011050  T
Q  201 ttcaaagctttagtaaaaccatatgcaagttgcaattctgtgggacaatactgcagctcaaccattccatta 272  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||    
T  29011051 ttcaaagctttagtaaaaccatatgcaagttgcagttctgtaggacaaaactgcagctcaaccattccatta 29011122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 28249095 - 28248943
Alignment:
Q  124 aatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccata 223  Q
    ||||||||| |||||| |||||||  |||||| | | |||||| | |||||| ||||  || |||||||||||||| ||||  ||||| ||||||||||     
T  28249095 aatactcccccttaat-cataactactgaatattaagaacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatc 28248997  T
Q  224 tgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcac 277  Q
     |||||||| | ||||||||| || || |||| ||||| |||||||||||||||    
T  28248996 agcaagttgtagttctgtggggcagtagtgcaactcaatcattccattagtcac 28248943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 279
Target Start/End: Complemental strand, 14234144 - 14233896
Alignment:
Q  32 cttgcttgtagcacaagctatctcactaactaacaaattttctaacaaattttctaactaacttgctaaa-tggcaggtatggattaaatcttaatactc 130  Q
    ||||||||| | ||||||||  || ||||||||| | |||| ||||||||| | ||||||||| ||| |  |||||| |||| ||||  |||||| ||||    
T  14234144 cttgcttgttgaacaagctaattccctaactaactagttttgtaacaaattct-taactaactagcttaggtggcagttatgaattatttcttaacactc 14234046  T
Q  131 cctcttaattcataactgttgaatactgaaaa-caccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaag 229  Q
    ||  ||||||| |||||| |||| | |||||| ||||||||||||| || | ||| |||||| |||||||||| |  || ||||||||||||| ||||||    
T  14234045 ccctttaattcttaactgctgaacattgaaaaacaccaagtttcttcctaaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgcaag 14233946  T
Q  230 ttgcaattctgtgggacaatactgcagctcaaccattccattagtcacct 279  Q
    |||||  || ||||||||||| |||| ||||| |||||||||||||||||    
T  14233945 ttgcagctcagtgggacaatattgcacctcaatcattccattagtcacct 14233896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 31000733 - 31000575
Alignment:
Q  32 cttgcttgtagcacaagctatctcactaactaacaaattttctaacaaattttctaactaactt-gctaaatggcaggtatggattaaat-cttaatact 129  Q
    ||||||||||| |||||||| || || |||||||||| |||  |||||| |  ||||||||||| | || | ||||| |||| |||||   ||||| |||    
T  31000733 cttgcttgtagaacaagctagctaaccaactaacaaactttgaaacaaaat--ctaactaactttgttacaaggcagttatgtattaatcacttaacact 31000636  T
Q  130 ccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaa 190  Q
    ||| ||||||||||||||| |||||  | |||||| |||||||||| |||| ||| |||||    
T  31000635 cccccttaattcataactgctgaatgttaaaaacatcaagtttcttcctcaaaaattcaaa 31000575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 40905560 - 40905518
Alignment:
Q  83 ttctaactaacttgctaaatggcaggtatggattaaatcttaa 125  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||    
T  40905560 ttctaactaacttgctacatggcagttatagattaaatcttaa 40905518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 279
Target Start/End: Original strand, 9238300 - 9238456
Alignment:
Q  123 taatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccat 222  Q
    ||||||| || ||||||||||||||| |||||  | | |||||||||||| || |||| ||| |||||| ||||||| |||||||  || ||||| ||||    
T  9238300 taatacttccccttaattcataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctttgtaaagccat 9238399  T
Q  223 atgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcacct 279  Q
     |||||| ||||||| ||| ||||||||||||| ||||| ||| |||||||||||||    
T  9238400 ctgcaagctgcaattatgtaggacaatactgcaactcaatcataccattagtcacct 9238456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 276
Target Start/End: Complemental strand, 9881316 - 9881073
Alignment:
Q  36 cttgtagcacaagctatctcactaactaacaaattttctaacaaattttctaactaacttg-ctaaatggcaggtatggattaaatcttaatactccctc 134  Q
    ||||||| |||||||| |||  |||||||| | |||| ||||||||| || |||||||||| |||  || ||| |||| ||||  |||||| |||||| |    
T  9881316 cttgtagaacaagctaactccataactaactagttttgtaacaaattctc-aactaacttgtctacgtgacagttatgaattatttcttaacactccccc 9881218  T
Q  135 ttaattcataactgttgaatactgaaaa--caccaagtttctttctcacaaactcaaattt-gtcaagtttcaaa-gctttagtaaaaccatatgcaagt 230  Q
    ||||||   || ||||||| | ||||||  ||||||||||||| |||| ||| |||||||| |||||||||  |  || ||||||||||||| |||||||    
T  9881217 ttaatttg-aattgttgaacattgaaaaaacaccaagtttcttcctcaaaaattcaaattttgtcaagtttttactgccttagtaaaaccatctgcaagt 9881119  T
Q  231 tgcaattctgtgggacaatactgcagctcaaccattccattagtca 276  Q
    ||||| || ||||||||||| |||| ||||  ||||||||||||||    
T  9881118 tgcaactcagtgggacaatattgcacctcattcattccattagtca 9881073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 272
Target Start/End: Complemental strand, 26905265 - 26905116
Alignment:
Q  123 taatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccat 222  Q
    ||||||||||  |||||||||||||| | |||| | | ||||||||||||||| || | ||| | |||||||||||| |||||||| || ||||| |||     
T  26905265 taatactccccattaattcataactgctaaatattaacaacaccaagtttcttccttaaaaatttaaatttgtcaagcttcaaagcctttgtaaagccac 26905166  T
Q  223 atgcaagttgcaattctgtgggacaatactgcagctcaaccattccatta 272  Q
    ||||||| |||| |||| | |||||||| || ||||||| |||| |||||    
T  26905165 atgcaagctgcagttctataggacaataatgtagctcaatcatttcatta 26905116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 277
Target Start/End: Complemental strand, 5707089 - 5706952
Alignment:
Q  140 tcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattct 239  Q
    ||||||||| |||||| | || ||||  | |||||| |||||||| |||||||||||||| ||||  || || ||||| ||||  |||||||| | ||||    
T  5707089 tcataactgctgaatattaaatacacttaatttcttcctcacaaattcaaatttgtcaagcttcactgcatttgtaaagccatcggcaagttgtagttct 5706990  T
Q  240 gtgggacaatactgcagctcaaccattccattagtcac 277  Q
    ||||| || || |||||||||| |||||||||||||||    
T  5706989 gtggggcagtagtgcagctcaatcattccattagtcac 5706952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 32347607 - 32347686
Alignment:
Q  3 tacaaagccttttataggca-aatatgatgcttgcttgtagcacaagctatctcactaactaacaaattttctaacaaattt 83  Q
    |||||||||||||||||||| ||||| |  ||||||||||| ||||||||||| |||||||||||||||||  |||||||||    
T  32347607 tacaaagccttttataggcacaatatca--cttgcttgtagaacaagctatctaactaactaacaaattttgaaacaaattt 32347686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 28964837 - 28964908
Alignment:
Q  1 attacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaatttt 72  Q
    |||||||||||||||||| |||||||  |  ||||||||||| ||||||||||| |||||| ||||||||||    
T  28964837 attacaaagccttttataagcaaatacaacacttgcttgtagtacaagctatctaactaacaaacaaatttt 28964908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 50935542 - 50935447
Alignment:
Q  123 taatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaac 219  Q
    |||||||||| |||||| ||||||||||||||| | || ||||| | |||||||||||  ||||||||| ||||||| ||||  ||||| |||||||    
T  50935542 taatactcccccttaat-cataactgttgaatattaaagacacctactttctttctcaggaactcaaatatgtcaagcttcactgcttttgtaaaac 50935447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11494187 - 11494105
Alignment:
Q  1 attacaaagccttt-tataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaattttctaacaaatt 82  Q
    |||||||||||| | ||||||||||  | || |||||||||||||||| ||||||||| ||||||| | |||| |||||||||    
T  11494187 attacaaagcctatatataggcaaaactaatacttgcttgtagcacaaactatctcacaaactaactagttttgtaacaaatt 11494105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 7043414 - 7043449
Alignment:
Q  32 cttgcttgtagcacaagctatctcactaactaacaa 67  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7043414 cttgcttgtagcacaagctatctaactaactaacaa 7043449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 28965279 - 28965320
Alignment:
Q  84 tctaactaacttgctaaatggcaggtatggattaaatcttaa 125  Q
    |||||||||||||||| ||||||  |||||||||||||||||    
T  28965279 tctaactaacttgctacatggcaattatggattaaatcttaa 28965320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 1663381 - 1663200
Alignment:
Q  2 ttacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaa--------ttttctaacaaattttctaactaac 93  Q
    |||||||| |||| |||||||||||| |  |||| |||||||||||||||||| |||||| ||| ||        |||| ||||||| || |||||||||    
T  1663381 ttacaaagactttcataggcaaatataacacttgtttgtagcacaagctatctaactaacaaactaactaagaagttttgtaacaaaatt-ctaactaac 1663283  T
Q  94 ttgctaaatggcaggtatggattaaatcttaatactccctcttaattcataactgttgaatactga-aaacaccaagtttctt 175  Q
    |||||| ||||||| |||||||||||||||||  ||| | ||||||||||||||| |||||  ||| ||||||||||||||||    
T  1663282 ttgctacatggcagttatggattaaatcttaacgctcgcccttaattcataactgctgaatgttgagaaacaccaagtttctt 1663200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 277
Target Start/End: Original strand, 18641184 - 18641321
Alignment:
Q  140 tcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattct 239  Q
    ||||||||| |||||| | || ||||  | |||||| |||||||| |||||||||||||| ||||  || || ||||| ||||  |||||||| | ||||    
T  18641184 tcataactgctgaatattaaatacacttaatttcttcctcacaaattcaaatttgtcaagcttcactgcatttgtaaagccatcggcaagttgtagttct 18641283  T
Q  240 gtgggacaatactgcagctcaaccattccattagtcac 277  Q
    ||||| || || |||||||||| |||||||||||||||    
T  18641284 gtggggcagtagtgcagctcaatcattccattagtcac 18641321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 285
Target Start/End: Complemental strand, 302273 - 302113
Alignment:
Q  124 aatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccata 223  Q
    ||||||||| |||||| ||||||||||||||| | |||||||| | |||||| ||||  || |||||| ||||||| ||||  ||||| ||||||||||     
T  302273 aatactcccccttaat-cataactgttgaatattaaaaacacctaatttcttcctcaagaattcaaatctgtcaagcttcattgcttttgtaaaaccatc 302175  T
Q  224 tgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcacctactctc 285  Q
     |||||||| | || |||||| || || |||||||||| ||||||||||||||||| |||||    
T  302174 agcaagttgtagttttgtggggcagtagtgcagctcaatcattccattagtcacctgctctc 302113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 12635241 - 12635117
Alignment:
Q  1 attacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaattttctaacaaattttctaactaacttgctaa 100  Q
    |||||||||||||||||||| |||||| |  ||||||||||||| ||| |||||||||||||||||| |||| ||| |||  ||||||| |||||||||     
T  12635241 attacaaagccttttataggaaaatataacacttgcttgtagcataagttatctcactaactaacaagttttgtaaaaaaaattctaaccaacttgctat 12635142  T
Q  101 atggcaggtatggattaaatcttaa 125  Q
     |||||| |||| ||||| ||||||    
T  12635141 gtggcagttatgtattaactcttaa 12635117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 3461686 - 3461568
Alignment:
Q  159 aaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattctgtgggacaatactgcagct 258  Q
    ||||||||||||| ||||||||  || |||||| ||||||| || |  || || ||||||||||  |||||||||| ||||||||| ||||| |||||||    
T  3461686 aaaacaccaagttcctttctcaagaattcaaatatgtcaagctttactgcctttgtaaaaccatcagcaagttgcagttctgtggggcaatagtgcagct 3461587  T
Q  259 caaccattccattagtcac 277  Q
    ||| |||||||||||||||    
T  3461586 caatcattccattagtcac 3461568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 277
Target Start/End: Original strand, 38099360 - 38099510
Alignment:
Q  127 actccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgc 226  Q
    |||||| |||||||||||| || |||||  | | ||||||||||||||| |||| ||| |||||| || |||| |||||||| || ||||| ||||||||    
T  38099360 actcccccttaattcataattgctgaatgttaacaacaccaagtttcttcctcaaaaattcaaatatgccaagcttcaaagcctttgtaaagccatatgc 38099459  T
Q  227 aagttgcaattctgtgggacaatactgcagctcaaccattccattagtcac 277  Q
     || | ||||||||| |||||||| || || |||| ||| |||||||||||    
T  38099460 tagctacaattctgtaggacaatattgtagttcaatcataccattagtcac 38099510  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 39190845 - 39190997
Alignment:
Q  123 taatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccat 222  Q
    |||||||||| |||||| |||||||| || ||| | |||||||| | |||||| ||||  || |||||| ||||||| ||||  ||||| | ||||||||    
T  39190845 taatactcccccttaat-cataactgctgcatattaaaaacacctaatttcttcctcaagaattcaaatctgtcaagcttcactgcttttgcaaaaccat 39190943  T
Q  223 atgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtca 276  Q
      |||||||||| ||||||||| || || |||||||||| ||||||||||||||    
T  39190944 cagcaagttgcagttctgtggggcagtagtgcagctcaatcattccattagtca 39190997  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 37786822 - 37786974
Alignment:
Q  124 aatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccata 223  Q
    ||||||||| |||||| |||||||| |||||| | |||||||| | ||| || ||||  || |||||| ||||||| ||||  ||||| ||||||||||     
T  37786822 aatactcccccttaat-cataactgctgaatattaaaaacacctaatttattcctcaagaattcaaatctgtcaagcttcactgcttttgtaaaaccatc 37786920  T
Q  224 tgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcac 277  Q
     |||||||| | ||||||||| || || |||||||||| |||||||||||||||    
T  37786921 agcaagttgtagttctgtggggcagtagtgcagctcaatcattccattagtcac 37786974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 279
Target Start/End: Complemental strand, 6414528 - 6414383
Alignment:
Q  134 cttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgc 233  Q
    ||||||| ||||||| |||||  | | |||| |||||||||| |||| ||  | |||| | ||||| |||||||| || |||||||||| |||||| |||    
T  6414528 cttaattaataactgctgaatgttaacaacaacaagtttcttcctcaaaagtttaaatctatcaagcttcaaagcctttgtaaaaccatctgcaagctgc 6414429  T
Q  234 aattctgtgggacaatactgcagctcaaccattccattagtcacct 279  Q
    |||||||| ||||| || |||| ||||| || ||||||||||||||    
T  6414428 aattctgtaggacagtaatgcaactcaatcactccattagtcacct 6414383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 9487884 - 9487816
Alignment:
Q  3 tacaaagccttttataggca-aatatgatgcttgcttgtagcacaagctatctcactaactaacaaatttt 72  Q
    ||||||||||||||||| || ||||| |  ||||||||||| ||||||||||| |||||||||||||||||    
T  9487884 tacaaagccttttatagacacaatatta--cttgcttgtagaacaagctatctaactaactaacaaatttt 9487816  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26794293 - 26794373
Alignment:
Q  1 attacaaagccttt-tataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaattttctaacaaa 80  Q
    |||||||||||||| ||||||||||  | |  ||||||||||| |||||||| ||| ||||||||| | |||| |||||||    
T  26794293 attacaaagcctttatataggcaaaactaacacttgcttgtagaacaagctaactccctaactaactagttttgtaacaaa 26794373  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 51119547 - 51119415
Alignment:
Q  1 attacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaa----ttttctaacaaattttctaactaacttg 96  Q
    |||||||||||||||||| |||||||| |  ||| ||||||||||||||||||| |||||||||| ||    |||| |||||||  ||||||||||||||    
T  51119547 attacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaactaacacgttttgtaacaaa-attctaactaacttg 51119449  T
Q  97 ctaaatggcaggtatggattaaatcttaatactc 130  Q
     || |||| || |||| |||||||||||| ||||    
T  51119448 ttacatgggagttatgaattaaatcttaacactc 51119415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 50778359 - 50778485
Alignment:
Q  159 aaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattctgtgggacaatactgcagct 258  Q
    ||||||||||||| ||| || | ||| |||||| ||||||| || |  || || ||||| ||||  |||||||||| ||||||||| ||||| |||||||    
T  50778359 aaaacaccaagttccttcctaaaaaattcaaatctgtcaagctttactgcctttgtaaagccatcagcaagttgcagttctgtggggcaatagtgcagct 50778458  T
Q  259 caaccattccattagtcacctactctc 285  Q
    ||| ||||| ||||||||||| |||||    
T  50778459 caatcattcaattagtcacctgctctc 50778485  T

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Target: scaffold0038 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 49257 - 49105
Alignment:
Q  124 aatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccata 223  Q
    ||||||||| |||||| |||||||  |||||| | | |||||| | |||||| ||||  || |||||||||||||| ||||  ||||| ||||||||||     
T  49257 aatactcccccttaat-cataactactgaatattaagaacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatc 49159  T
Q  224 tgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcac 277  Q
     |||||||| | ||||||||| || || |||| ||||| |||||||||||||||    
T  49158 agcaagttgtagttctgtggggcagtagtgcaactcaatcattccattagtcac 49105  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 285
Target Start/End: Complemental strand, 30380571 - 30380427
Alignment:
Q  140 tcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattct 239  Q
    |||||||||||||| |   |||||||||||||| || |||| ||| | |||| ||||||| ||||  ||||| ||||| |||||||||||||||| ||||    
T  30380571 tcataactgttgaacatcaaaaacaccaagttttttcctcaaaaattaaaatatgtcaagcttcactgcttttgtaaa-ccatatgcaagttgcagttct 30380473  T
Q  240 gtgggacaatactgcagctcaaccattccattagtcacctactctc 285  Q
    || | | | || || ||||||| ||||||||||||||||| |||||    
T  30380472 gttgtatagtagtgtagctcaatcattccattagtcacctgctctc 30380427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 35898510 - 35898384
Alignment:
Q  159 aaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcaattctgtgggacaatactgcagct 258  Q
    ||||||||||||| ||| ||||  || |||||| ||||||  ||||  || ||  |||| ||||| |||||||||| ||| ||||  ||||| |||||||    
T  35898510 aaaacaccaagttccttcctcaagaattcaaatctgtcaaacttcactgcctttttaaagccataagcaagttgcagttccgtggagcaatagtgcagct 35898411  T
Q  259 caaccattccattagtcacctactctc 285  Q
    ||| ||||||||||||||||| |||||    
T  35898410 caatcattccattagtcacctgctctc 35898384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 279
Target Start/End: Complemental strand, 297010 - 296854
Alignment:
Q  123 taatactccctcttaattcataactgttgaatactgaaaa-caccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaacca 221  Q
    |||||||||| |||||| |||||||| |||||| | |||| |||| | |||||| ||||  || |||||| ||||||| |||   ||||| |||||||||    
T  297010 taatactcccccttaat-cataactgctgaatattaaaaaacacctaatttcttcctcaagaattcaaatgtgtcaagcttcgctgcttttgtaaaacca 296912  T
Q  222 tatgcaagttgcaattctgtgggacaatactgcagctcaaccattccattagtcacct 279  Q
    |   ||||||| | ||||||||| || || |||| ||| | |||||||||||||||||    
T  296911 tcaacaagttgtagttctgtggggcagtagtgcaactctatcattccattagtcacct 296854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 261
Target Start/End: Original strand, 2275 - 2413
Alignment:
Q  123 taatactccctcttaattcataactgttgaatactgaaaacaccaagtttctttctcacaaactcaaatttgtcaagtttcaaagctttagtaaaaccat 222  Q
    |||||||||| ||||||||||||||| | |||  | | |||||||||||| || |||| ||| | |||| | ||||| |||||||  || ||||| ||||    
T  2275 taatactcccccttaattcataactgcttaatgttcacaacaccaagttttttcctcaaaaattaaaatatttcaagcttcaaagtctttgtaaagccat 2374  T
Q  223 atgcaagttgcaattctgtgggacaatactgcagctcaa 261  Q
     |||||| ||||||| ||| ||||||||||||| |||||    
T  2375 ctgcaagctgcaattatgtaggacaatactgcaactcaa 2413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 59517 - 59581
Alignment:
Q  3 tacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaacaaa 68  Q
    |||||||||||||||||||| | |||   ||||||||||| ||||||||| | |||||||||||||    
T  59517 tacaaagccttttataggcaca-atggcacttgcttgtagaacaagctatttaactaactaacaaa 59581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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