View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_32 (Length: 274)
Name: NF13200_low_32
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 24687794 - 24687538
Alignment:
| Q |
1 |
gtgagtaaagacagaaaacatgttgaggcttagcttggaactatacnnnnnnnnnnnnn--caaggactcacggatgaacaattgacataaagaaagcac |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24687794 |
gtgagtaaagacagaaaacatgttgaggcttagcttggaactatacagagagagagagagacaaggactcacggatgaacaattgacataaagaaagcac |
24687695 |
T |
|
| Q |
99 |
gggtgttaaaagtaagaaacaaacctggttatgaagcatgggaggaatgattctttgtgnnnnnnnnnnnnngagtatggtgggaatgattcatgtatct |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24687694 |
gggtgttaaaagtaagaaacaaacctggttatgaagcatgggaggaatgattctttgtgaaaaagaaaaaaagagtatggtgggaatgattcatgtatct |
24687595 |
T |
|
| Q |
199 |
tgaaagggtattgtttttaaaggtggagttaagtcatgacatgcctttgctccatat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24687594 |
tgaaagggtattgtttttaaaggtggagttaagtcatgacatgcctttgctccatat |
24687538 |
T |
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