View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_35 (Length: 267)
Name: NF13200_low_35
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 16905923 - 16906151
Alignment:
| Q |
24 |
aacataactatcaatattaacttggataatctcattgcactaaatcttgtttcaaaaatagcaagnnnnnnnnntgagtttggcaaagaaaaggattgat |
123 |
Q |
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| T |
16905923 |
aacataactatcaatatcaacttggataatctcattgcactaaatcttgtttcaaaaatagcaagaaaaaaa--tgagtttggtaaagaaaag-attgat |
16906019 |
T |
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| Q |
124 |
aaaatgactagagatggttagatagaga------cagatagaaaaggggaagatcatgtacttagtgagtgaag---acaaagcaaaaggaattggtgat |
214 |
Q |
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| T |
16906020 |
aaaatgactagagatagtgagatagagatagagacagatagaaaaggggaagatcatgtacttagtgagtgaagaagacaaagcaaaaggaattggtgat |
16906119 |
T |
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| Q |
215 |
gatgatattagtgaaaaaggatataaggggta |
246 |
Q |
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| T |
16906120 |
gatgatattagtgaaaaaagatataaggggta |
16906151 |
T |
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