View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13200_low_36 (Length: 261)

Name: NF13200_low_36
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13200_low_36
NF13200_low_36
[»] chr6 (3 HSPs)
chr6 (18-261)||(10117179-10117420)
chr6 (190-255)||(32296380-32296445)
chr6 (179-232)||(9177634-9177684)
[»] chr8 (3 HSPs)
chr8 (179-255)||(23490047-23490122)
chr8 (179-255)||(7154346-7154422)
chr8 (204-255)||(14867355-14867406)
[»] chr2 (8 HSPs)
chr2 (179-254)||(37794729-37794803)
chr2 (179-255)||(17989065-17989140)
chr2 (179-255)||(35016459-35016534)
chr2 (114-181)||(409818-409885)
chr2 (120-171)||(1399319-1399370)
chr2 (120-171)||(1403014-1403065)
chr2 (88-142)||(404557-404611)
chr2 (211-255)||(5428657-5428701)
[»] chr7 (7 HSPs)
chr7 (181-247)||(39653536-39653602)
chr7 (179-255)||(25635981-25636057)
chr7 (179-244)||(45435419-45435484)
chr7 (179-252)||(10493487-10493560)
chr7 (179-247)||(47363781-47363848)
chr7 (114-166)||(1446151-1446203)
chr7 (200-255)||(33049132-33049187)
[»] chr4 (7 HSPs)
chr4 (179-255)||(55606324-55606399)
chr4 (179-255)||(28146999-28147074)
chr4 (179-255)||(38411946-38412022)
chr4 (190-255)||(11440605-11440670)
chr4 (179-255)||(13198158-13198233)
chr4 (186-247)||(25968024-25968084)
chr4 (179-238)||(46308430-46308488)
[»] chr3 (5 HSPs)
chr3 (179-255)||(11783484-11783560)
chr3 (90-179)||(45810728-45810817)
chr3 (187-247)||(7299132-7299192)
chr3 (204-253)||(19596541-19596590)
chr3 (210-255)||(21926543-21926588)
[»] chr1 (6 HSPs)
chr1 (190-255)||(32617658-32617722)
chr1 (179-237)||(12990549-12990606)
chr1 (182-243)||(34664806-34664867)
chr1 (193-255)||(24699887-24699949)
chr1 (179-253)||(9457636-9457709)
chr1 (179-253)||(9461733-9461806)
[»] chr5 (5 HSPs)
chr5 (178-255)||(39426166-39426243)
chr5 (179-245)||(41283518-41283582)
chr5 (187-255)||(13424721-13424789)
chr5 (186-255)||(22927149-22927219)
chr5 (105-161)||(36198875-36198931)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 10117420 - 10117179
Alignment:
Q  18 tatctgatatacacagtttctgtagttattatggcagaagcagcgaaaacttaagataattaaaaagagcatatattaccatgtgttattgttatattcc 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10117420 tatctgatatacacagtttctgtagttattatgacagaagcagtgaaaacttaagacaattaaaaagagcatatattaccatgtgttattgttatattcc 10117321  T
Q  118 gatgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttgtctcattatttggagttctaaactagataaggagataacattatgt 217  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  10117320 gatgaaagcactttcaaatttggagtttctaggcatacaactattcaaggtttgtctcattatttggagttctaaactagataaggagat--tattatgt 10117223  T
Q  218 aatttatgatcaaatatgtaccaaaaatataattttcaattcat 261  Q
    ||||||||||||||||||||| |||||||| |||||||||||||    
T  10117222 aatttatgatcaaatatgtactaaaaatatgattttcaattcat 10117179  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 32296445 - 32296380
Alignment:
Q  190 taaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||||    
T  32296445 taaactatataaggagataccattatgtaacttatgatcaaatatgtactaaaaatatgattttca 32296380  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 9177684 - 9177634
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaat 232  Q
    ||||||||||||||||||| |   ||||||||||||||||||||||||||||||    
T  9177684 atttggagttctaaactaggt---gagataacattatgtaatttatgatcaaat 9177634  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 23490047 - 23490122
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  23490047 atttggagttctaaactagataaggagataac-ttatgtaatttatgatcaaatatgtacgaaaaatatgattttca 23490122  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 7154346 - 7154422
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    |||| ||||||| ||  |||||||||||||  |||||||||| ||||||||||||||||  |||||||| |||||||    
T  7154346 attttgagttctgaatcagataaggagatataattatgtaatatatgatcaaatatgtattaaaaatatgattttca 7154422  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 14867355 - 14867406
Alignment:
Q  204 agataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    ||||||||| |||||||||||| |||||||||||| |||||| | |||||||    
T  14867355 agataacatcatgtaatttatgttcaaatatgtactaaaaatgtgattttca 14867406  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 37794729 - 37794803
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttc 254  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  37794729 atttggagttctaaactagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttc 37794803  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 17989065 - 17989140
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||    
T  17989065 atttggagttctaaactagataaggagataa-attatataatttatgatcaaatatgtactaaaaatatgattttca 17989140  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 35016459 - 35016534
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||    
T  35016459 atttggaattctaaactagataaggagataac-ttatataatttatgatcaaatatgtatcaaaaatatgattttca 35016534  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 409818 - 409885
Alignment:
Q  114 ttccgatgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttgtctcattatt 181  Q
    ||||||||||| | |||||||||||||||||| || | |||||||||||  |||||||| || |||||    
T  409818 ttccgatgaaatcgctttcaaatttggagtttctacgtatacaactattggaggtttgtttcgttatt 409885  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 1399319 - 1399370
Alignment:
Q  120 tgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttg 171  Q
    ||||| ||||||||||| |||||||| || |||||||||||| |||||||||    
T  1399319 tgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttg 1399370  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 1403014 - 1403065
Alignment:
Q  120 tgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttg 171  Q
    ||||| ||||||||||| |||||||| || |||||||||||| |||||||||    
T  1403014 tgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttg 1403065  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 404557 - 404611
Alignment:
Q  88 atatattaccatgtgttattgttatattccgatgaaagcactttcaaatttggag 142  Q
    |||||||||| | | |||||| ||| ||||||||||||||||||||||| |||||    
T  404557 atatattaccctctattattgctattttccgatgaaagcactttcaaatgtggag 404611  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 5428701 - 5428657
Alignment:
Q  211 attatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    |||||||||||||||||||| ||||||| || ||||| |||||||    
T  5428701 attatgtaatttatgatcaattatgtactaataatatgattttca 5428657  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 39653536 - 39653602
Alignment:
Q  181 ttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 247  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  39653536 ttggagttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaatat 39653602  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 25635981 - 25636057
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |||| |||||||    
T  25635981 atttggagttctaaactagacaaggagataacattatgtaatttatgattaaatatgtactaaagatatgattttca 25636057  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 45435484 - 45435419
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaa 244  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  45435484 atttgaagttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaa 45435419  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 10493487 - 10493560
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattt 252  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |  |||||||| ||||    
T  10493487 atttggaggtctaaactatataaggagataacattatgtaatttatgatcaaatatgcattaaaaatatgattt 10493560  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 47363781 - 47363848
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 247  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  47363781 atttgaagttctaaactagataaggagataac-ttatgtaatctatgatcaaatatgtactaaaaatat 47363848  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 1446203 - 1446151
Alignment:
Q  114 ttccgatgaaagcactttcaaatttggagtttttaagcatacaactattcaag 166  Q
    ||||||||||||||||||||||| |||||||| || ||||| |||||| ||||    
T  1446203 ttccgatgaaagcactttcaaatgtggagtttctacgcataaaactatacaag 1446151  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 33049187 - 33049132
Alignment:
Q  200 aaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    ||||||||||| || ||||||||||| |||||||||||| |||||| | |||||||    
T  33049187 aaggagataaccttctgtaatttatgttcaaatatgtactaaaaatgtgattttca 33049132  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 55606324 - 55606399
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  55606324 atttggagttctaaactatataaggaaataac-ttatgtaatttatgatcaaatatgtactaaaaatataattttca 55606399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 28147074 - 28146999
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  28147074 atttggaattctaaattagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttca 28146999  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 38411946 - 38412022
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||  |||||||| |||||||    
T  38411946 atttggagttctaaactagataaggaaataacattatgtaatttataatcaagtatgtagtaaaaatatgattttca 38412022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 11440670 - 11440605
Alignment:
Q  190 taaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  11440670 taaactatataagaagataacattatgtaatttatgatcaaatatgtactaaaaatatgattttca 11440605  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 13198158 - 13198233
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || || ||||| |||||||    
T  13198158 atttggagttctaaattagataaggagataac-ttatgtaatttatgatcaaatatgcactaagaatatgattttca 13198233  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 25968084 - 25968024
Alignment:
Q  186 gttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 247  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  25968084 gttctaaactagataagaagataac-ttatgtaatttattatcaaatatgtaccaaaaatat 25968024  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 46308430 - 46308488
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtac 238  Q
    |||| |||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  46308430 atttagagttctaaactaactaaggagataac-ttatgtaatttatgatcaaatatgtac 46308488  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 11783484 - 11783560
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||    
T  11783484 atttggagttctaaactagacaaggagacaacattgtgtaatttatgatcaaatatgtactaaaaatatgattttca 11783560  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 45810817 - 45810728
Alignment:
Q  90 atattaccatgtgttattgttatattccgatgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttgtctcatta 179  Q
    ||||||| || |||||||| ||| ||||||||||||||||||| |||||||||||| |  |||| ||||||| | |||||||||||||||    
T  45810817 atattactatctgttattgctattttccgatgaaagcactttcgaatttggagtttctccgcattcaactatccgaggtttgtctcatta 45810728  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 7299192 - 7299132
Alignment:
Q  187 ttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 247  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  7299192 ttctaaagtagataaggagataacattatgtaatttatgattaaatatgtacttaaaatat 7299132  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 19596541 - 19596590
Alignment:
Q  204 agataacattatgtaatttatgatcaaatatgtaccaaaaatataatttt 253  Q
    |||||||||||||||| ||||| |||||| ||||| |||||||| |||||    
T  19596541 agataacattatgtaacttatgttcaaatttgtactaaaaatatgatttt 19596590  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 21926543 - 21926588
Alignment:
Q  210 cattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    |||||||||||||||||| ||||||||||  ||||||| |||||||    
T  21926543 cattatgtaatttatgattaaatatgtactgaaaatatgattttca 21926588  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 32617658 - 32617722
Alignment:
Q  190 taaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  32617658 taaactagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttca 32617722  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 12990606 - 12990549
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgta 237  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12990606 atttgaagttctaaactagataaggagataa-attatgtaatttatgatcaaatatgta 12990549  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 34664867 - 34664806
Alignment:
Q  182 tggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaa 243  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||    
T  34664867 tggagttctaaactagataagaagataacgttatgtaatttatgatcaaatacgtactaaaa 34664806  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 24699887 - 24699949
Alignment:
Q  193 actagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    |||||||||  ||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||    
T  24699887 actagataaaaagataacattatgtaatatattatcaaatatatacgaaaaatataattttca 24699949  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 9457709 - 9457636
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataatttt 253  Q
    |||| ||||||||||| || |||||||||||| | | |||||||||||||| ||||||| ||||||||| |||||    
T  9457709 attttgagttctaaacaaggtaaggagataacttga-gtaatttatgatcagatatgtatcaaaaatatgatttt 9457636  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 9461806 - 9461733
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataatttt 253  Q
    |||| ||||||||||| || |||||||||||| | | |||||||||||||| ||||||| ||||||||| |||||    
T  9461806 attttgagttctaaacaaggtaaggagataacttga-gtaatttatgatcagatatgtatcaaaaatatgatttt 9461733  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 39426166 - 39426243
Alignment:
Q  178 tatttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaa-atataattttca 255  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||    
T  39426166 tatttgga-ttctaaactatataaggagatgacattatgtaatttatgatcaaatatgtactaaaatatatgattttca 39426243  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 41283582 - 41283518
Alignment:
Q  179 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaat 245  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||||||| || ||||| ||||||    
T  41283582 atttgaagttctaaactagataaggagataac-ttat-taatttatgatcagatttgtactaaaaat 41283518  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 13424721 - 13424789
Alignment:
Q  187 ttctaaactagat-aaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 255  Q
    ||||||| ||||| ||||||||||| ||| || |||||||||||||||||||| |||||||| |||||||    
T  13424721 ttctaaaatagattaaggagataac-ttacgtgatttatgatcaaatatgtactaaaaatattattttca 13424789  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 22927149 - 22927219
Alignment:
Q  186 gttctaaactagataaggagataacattatgtaatttatgatcaaa--tatgtaccaaaaatataattttca 255  Q
    ||||||||||||| || ||||||||| ||||| |||||||||||||  | ||||| |||||||| |||||||    
T  22927149 gttctaaactagacaatgagataaca-tatgtgatttatgatcaaatgtgtgtacaaaaaatatgattttca 22927219  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 36198875 - 36198931
Alignment:
Q  105 attgttatattccgatgaaagcactttcaaatttggagtttttaagcatacaactat 161  Q
    ||||| ||||||| |||||||||||||  |||| ||||||| |||| ||||||||||    
T  36198875 attgtgatattccaatgaaagcactttttaattcggagtttctaagaatacaactat 36198931  T

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