View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_37 (Length: 253)
Name: NF13200_low_37
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_37 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 15135916 - 15135837
Alignment:
| Q |
174 |
tacctttaaaattagagagttttcatgtcttcttcaagagagaaaatagcaacttgaattaaaaccgttgttttgcattt |
253 |
Q |
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| T |
15135916 |
tacctttaaaattaatgagttttcatgtcttcttcaagagagaaaatagcaacttgaattaaaaccgttgttttgcattt |
15135837 |
T |
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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 15136073 - 15136000
Alignment:
| Q |
17 |
actgataaaaggatcatataagaaaaatattgcatgtgttgtgttcatacgaagattctagagaggaaagagac |
90 |
Q |
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| T |
15136073 |
actgataaaaggatcatataagaaaaatattgcatgtgttgtgttcatatgaagattctagagaggaaagagac |
15136000 |
T |
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