View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_39 (Length: 249)
Name: NF13200_low_39
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 251129 - 250907
Alignment:
| Q |
17 |
aattgccgactaaggtaaattttatgtatatactcaatatcatgcttcattctcttgagaaatatatttggtttgccaatatatagtaaaacttgatgag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251129 |
aattgccgactaaggtaaattttatgtatatactcaatatcatgcttcattctcttgagaaatatatttggtttgccaatatatagtaaaacttgatgag |
251030 |
T |
|
| Q |
117 |
ataattttgttcatatacttcatatatacttaaatctgtataaaaagaatatagctgtaaatggctgactgaccaccgtctaatttcctaacatgattta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251029 |
ataattttgttcatatacttcatatatacttaaatctgtataaaaagaatatagctgtaaatggctgactgaccaccgtctaatttcctaacatgattta |
250930 |
T |
|
| Q |
217 |
tccaagaattaatcaatcctatg |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
250929 |
tccaagaattaatcaatcctatg |
250907 |
T |
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