View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_42 (Length: 248)
Name: NF13200_low_42
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_42 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 33710932 - 33710702
Alignment:
| Q |
18 |
gtattgcgcggaacaatagcgatttgttcaaattccgatttgttataatatattgattgtttaatttatagaagcctaaagtcaatttggttgtttcaag |
117 |
Q |
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| T |
33710932 |
gtattgcgcagaacaatagcgattcgttcaaattccgattcgttataatatattgattgtttaatttatagaagcctaaagtcaatttggttgtttcaag |
33710833 |
T |
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| Q |
118 |
tgcaggcacaagattcaagctttgtcaacacaccaacagtggcaggaaaaacagtcagaaagctatttcagattcttttctacttgtatctggttctgat |
217 |
Q |
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| T |
33710832 |
tgtaggcacaagattcaagctttgtcaacacaccaacagtggcaggaaaaacagtcagaaagctatttcagattcttttctacttgtatctggttctgat |
33710733 |
T |
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| Q |
218 |
ttcaatcttggtgattttcatcaccgtctat |
248 |
Q |
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| T |
33710732 |
ttcaatcttggtgattttcatcaccgtctat |
33710702 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 27400563 - 27400535
Alignment:
| Q |
25 |
gcggaacaatagcgatttgttcaaattcc |
53 |
Q |
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| T |
27400563 |
gcggaacaatagcgatttgttcaaattcc |
27400535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 47848026 - 47848058
Alignment:
| Q |
27 |
ggaacaatagcgatttgttcaaattccgatttg |
59 |
Q |
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| T |
47848026 |
ggaacaatagcgatttgttcaaattccgctttg |
47848058 |
T |
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