View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_46 (Length: 239)
Name: NF13200_low_46
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_46 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8392784 - 8393022
Alignment:
| Q |
1 |
aagaaaaaagaaaagaaattgagcgtattgcacaacaattaccaataaccaggacttgcacgttaccaccagaaaagctttccatttcaataaaaaattg |
100 |
Q |
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| T |
8392784 |
aagaaaaaagaaaagaaattgagcgtattgcacaacaattaccaataaccaggacttgctcgttaccaccggaaaagctttccatttcaataaaaaattg |
8392883 |
T |
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| Q |
101 |
tgtcttcatatgtctagttatttcatgctcattatcattatgctgcaacaagttacacatatattatataaattagagaaaatttcatgtctttaaattc |
200 |
Q |
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| T |
8392884 |
tgtcttcatacgtctagttatttcatgctcattatcattacgctgcaacaagttacacatatattatataaattagagaaaatttcatgtctttaaattc |
8392983 |
T |
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| Q |
201 |
taatagatgaaactctattactcaattaattaaaaatct |
239 |
Q |
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| T |
8392984 |
taatagatgaaactctattactcaattaattaaaaatct |
8393022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 37 - 237
Target Start/End: Complemental strand, 8409168 - 8408969
Alignment:
| Q |
37 |
aattaccaataaccaggacttgcacgttaccaccagaaaagctttccatttcaataaaaaattgtgtcttcatatgtctagttatttcatgctcattatc |
136 |
Q |
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| T |
8409168 |
aattaccaataaccaggacttgctcgttaccaccggcaaagccttccatttcaataagaaattgtgtctttatacgtccagttacttcatactcatt-tc |
8409070 |
T |
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| Q |
137 |
att-atgctgcaacaagttacacatatattatataaattagagaaaatttcatgtctttaaattct-aatagatgaaactctattactcaattaattaaa |
234 |
Q |
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| T |
8409069 |
ttggacgctgcaacaagttacgcatat--tagaaaaataagagaaaatttcatgtctttaaattcttaatagatgaaactctattactcaattatttaaa |
8408972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 8397997 - 8398179
Alignment:
| Q |
11 |
aaaagaaattgagcgtattgcacaacaattaccaataaccaggacttgcacgttaccaccagaaaagctttccatttcaataaaaaattgtgtcttcata |
110 |
Q |
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| T |
8397997 |
aaaagaaattgagtgtgttgctcaacaattaccaataaccaagacttggtcgtcaccaccgtcaaagccttccatttcaataagaaactgtgtcttgata |
8398096 |
T |
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| Q |
111 |
tgtctagttatttcatgctcattatcatt----at--gctgcaacaagttacacatatattatataaattagagaaaatttcatg |
189 |
Q |
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| T |
8398097 |
cgtctagatgcttcatgctcattaccatttgacattctctgcaacaagtt--acatgtattaaataaataagagaaaatttcatg |
8398179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 8424486 - 8424390
Alignment:
| Q |
11 |
aaaagaaattgagcgtattg-cacaacaattaccaataaccaggacttgcacgttaccaccagaaaagctttccatttcaataaaaaattgtgtctt |
106 |
Q |
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| T |
8424486 |
aaaagaaattgagcctagtggctcaacaattacctataagcagaactttctcgttaccactgtcaaagccttccatttcaataagaaactgtgtctt |
8424390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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