View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_52 (Length: 212)
Name: NF13200_low_52
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 22490766 - 22490841
Alignment:
| Q |
58 |
caaaccggaaccccccagggaccggcagcggccataacagacacaaaacaacagcagaaaataggtatcaaaccag |
133 |
Q |
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| T |
22490766 |
caaaccggaaccccccaggcacctgcagcgtccataacatacacaaaacagcagcagaaaacaggtatcaaaccag |
22490841 |
T |
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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 50019061 - 50019108
Alignment:
| Q |
145 |
caaaaacagttgctgcactgtcatgacagcagcagcgcccgtgccccc |
192 |
Q |
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| T |
50019061 |
caaaaacagttgctgcactgtcatgacagccgcagcgcccgtgccccc |
50019108 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 24357763 - 24357729
Alignment:
| Q |
158 |
tgcactgtcatgacagcagcagcgcccgtgccccc |
192 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
24357763 |
tgcactgtcatgacagcagcagcgccagtgccccc |
24357729 |
T |
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