View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13200_low_7 (Length: 551)

Name: NF13200_low_7
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13200_low_7
NF13200_low_7
[»] chr2 (18 HSPs)
chr2 (225-524)||(9007240-9007539)
chr2 (225-533)||(9029128-9029436)
chr2 (257-533)||(8994471-8994747)
chr2 (16-125)||(9029562-9029671)
chr2 (23-123)||(13001597-13001697)
chr2 (225-326)||(9019824-9019925)
chr2 (16-115)||(17117642-17117741)
chr2 (275-353)||(8978445-8978524)
chr2 (165-212)||(9029477-9029524)
chr2 (16-65)||(25222341-25222390)
chr2 (16-73)||(42759753-42759810)
chr2 (165-205)||(41096693-41096733)
chr2 (169-212)||(13001471-13001514)
chr2 (16-65)||(6530677-6530726)
chr2 (16-65)||(19367416-19367465)
chr2 (16-65)||(42411555-42411604)
chr2 (165-212)||(1226415-1226462)
chr2 (165-212)||(42759903-42759948)
[»] chr1 (14 HSPs)
chr1 (16-125)||(1269509-1269618)
chr1 (13-125)||(5560433-5560553)
chr1 (166-212)||(1269422-1269468)
chr1 (16-65)||(12884134-12884183)
chr1 (64-125)||(37873815-37873876)
chr1 (62-125)||(15441240-15441303)
chr1 (62-125)||(27703580-27703643)
chr1 (165-212)||(50552357-50552404)
chr1 (16-59)||(50552519-50552562)
chr1 (26-123)||(26486380-26486477)
chr1 (16-65)||(30899674-30899723)
chr1 (16-65)||(33124627-33124676)
chr1 (17-65)||(6150739-6150787)
chr1 (165-205)||(48722527-48722566)
[»] chr8 (14 HSPs)
chr8 (16-121)||(42777707-42777812)
chr8 (431-527)||(44883949-44884036)
chr8 (22-66)||(3628750-3628794)
chr8 (16-125)||(34523948-34524065)
chr8 (165-212)||(33452655-33452701)
chr8 (22-65)||(39697941-39697984)
chr8 (178-212)||(42777615-42777649)
chr8 (16-58)||(43968067-43968109)
chr8 (16-65)||(3471618-3471667)
chr8 (16-65)||(5869319-5869368)
chr8 (16-65)||(12531577-12531626)
chr8 (16-65)||(43926320-43926369)
chr8 (22-74)||(36515159-36515211)
chr8 (225-273)||(44882742-44882790)
[»] chr6 (8 HSPs)
chr6 (16-125)||(11088506-11088614)
chr6 (16-65)||(29401158-29401207)
chr6 (16-125)||(30915363-30915480)
chr6 (165-212)||(6360624-6360670)
chr6 (16-65)||(57706-57755)
chr6 (16-65)||(628092-628141)
chr6 (16-65)||(12614713-12614762)
chr6 (17-65)||(31861019-31861067)
[»] chr7 (16 HSPs)
chr7 (22-125)||(32956725-32956836)
chr7 (16-125)||(26633313-26633430)
chr7 (16-65)||(30739141-30739190)
chr7 (13-65)||(8358288-8358340)
chr7 (22-65)||(18895400-18895443)
chr7 (21-123)||(40737993-40738103)
chr7 (22-63)||(42312029-42312070)
chr7 (16-65)||(44876152-44876201)
chr7 (22-123)||(9479079-9479188)
chr7 (165-212)||(11672447-11672493)
chr7 (16-65)||(1366027-1366076)
chr7 (171-212)||(6380244-6380285)
chr7 (16-65)||(26282539-26282588)
chr7 (23-60)||(33419121-33419158)
chr7 (16-65)||(33910082-33910131)
chr7 (17-65)||(40001694-40001742)
[»] chr4 (8 HSPs)
chr4 (22-65)||(43154791-43154834)
chr4 (16-125)||(5545279-5545396)
chr4 (16-65)||(21791544-21791593)
chr4 (16-65)||(10575520-10575569)
chr4 (16-65)||(11681739-11681788)
chr4 (16-65)||(11690018-11690067)
chr4 (16-65)||(53011730-53011779)
chr4 (65-125)||(22423634-22423694)
[»] chr3 (12 HSPs)
chr3 (22-125)||(42009265-42009376)
chr3 (62-125)||(21596285-21596348)
chr3 (62-121)||(1649882-1649941)
chr3 (165-212)||(8364035-8364081)
chr3 (23-123)||(19965884-19965992)
chr3 (16-58)||(15987225-15987267)
chr3 (16-58)||(29387751-29387793)
chr3 (16-65)||(8364190-8364239)
chr3 (16-65)||(41707052-41707101)
chr3 (16-65)||(51939553-51939602)
chr3 (28-65)||(54430570-54430607)
chr3 (24-60)||(23067730-23067766)
[»] chr5 (11 HSPs)
chr5 (16-65)||(29156208-29156257)
chr5 (63-125)||(27351299-27351361)
chr5 (27-65)||(33281692-33281730)
chr5 (16-65)||(13656228-13656277)
chr5 (16-65)||(19099311-19099360)
chr5 (62-123)||(23069172-23069233)
chr5 (16-65)||(10591270-10591319)
chr5 (16-65)||(13474648-13474697)
chr5 (16-65)||(17513933-17513982)
chr5 (16-65)||(20976003-20976052)
chr5 (25-65)||(7390406-7390446)
[»] scaffold0126 (1 HSPs)
scaffold0126 (13-65)||(16728-16780)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 225 - 524
Target Start/End: Complemental strand, 9007539 - 9007240
Alignment:
Q  225 cactaaaaagtgaacaagaagtccaacaaaccctcaatatcatgcgacagatatttctccgaataaaattatgcttgcttagaattgttgtttggctgct 324  Q
    ||||||||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007539 cactaaaaaattaacaagcagtccaaccaaccctcaatatcatgcgacagatatttctccgaataaaattatgcttgcttagaattgttgtttggctgct 9007440  T
Q  325 gatgttgtgtatagtaaactgttttgaaacatttgacaatgttcacccctttcacatcatcaaagttcttatcctgatgctgttcaattacaagcctcta 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007439 gatgttgtgtatagtaaactgttttgaaacatttgacaatgttcacctctttcacatcatcaaagttcttatcctgatgctgttcaattacaagcctcta 9007340  T
Q  425 ttattgccccgctaccatcgtcatcatgatcaacacgaacttgaatttcaggaagattagcaactgaataattaaacatgttctcctcctcctcttcctc 524  Q
    ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  9007339 ttcgtgccccgctaccatcgtcatcatgatcaacacgaactcgaatttcaggaagattagcaactgaataattaaacatgttctcctcctcttcctcctc 9007240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 225 - 533
Target Start/End: Complemental strand, 9029436 - 9029128
Alignment:
Q  225 cactaaaaagtgaacaagaagtccaacaaaccctcaatatcatgcgacagatatttctccgaataaaattatgcttgcttagaattgttgtttggctgct 324  Q
    |||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  9029436 cactaaaaagtgaacaagaattccattcaaccctcaatatcatgcgacagatatttctccgaatcaaattatgcttgcttagcattgttgtttggctgct 9029337  T
Q  325 gatgttgtgtatagtaaactgttttgaaacatttgacaatgttcacccctttcacatcatcaaagttcttatcctgatgctgttcaattacaagcctcta 424  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9029336 gatgttgtctatagataactgttttgaaacatttgacaatgttcacccctttcacatcatcaaagttcttatcctgatgctgttcaattacaagcctcta 9029237  T
Q  425 ttattgccccgctaccatcgtcatcatgatcaacacgaacttgaatttcaggaagattagcaactgaataattaaacatgttctcctcctcctcttcctc 524  Q
    ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9029236 ttcgtgccccgctaccatcgtcatcatgatcaacacgaactcgaatttcaggaagattagcaactgattaattaaacatgttctcctcctcctcttcctc 9029137  T
Q  525 cacctcatc 533  Q
    | |||||||    
T  9029136 ctcctcatc 9029128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 257 - 533
Target Start/End: Complemental strand, 8994747 - 8994471
Alignment:
Q  257 ctcaatatcatgcgacagatatttctccgaataaaattatgcttgcttagaattgttgtttggctgctgatgttgtgtatagtaaactgttttgaaacat 356  Q
    |||||| |||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  8994747 ctcaatgtcatccgacagatatttctacgaatcaaattatgcttgcttagcattgttgtttggctgctgatgctgtctataggaaactgttttgaaacat 8994648  T
Q  357 ttgacaatgttcacccctttcacatcatcaaagttcttatcctgatgctgttcaattacaagcctctattattgccccgctaccatcgtcatcatgatca 456  Q
    | |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  8994647 tggacattgttcaccccttgcacatcatcaaagttcttatcctgatgctcttcaattacaagcctctattcgtgccccgctaccatcgtcatcatgatca 8994548  T
Q  457 acacgaacttgaatttcaggaagattagcaactgaataattaaacatgttctcctcctcctcttcctccacctcatc 533  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8994547 acacgaactcgaatttcaggaagattagcaactgaataattaaacatgttctcctcctcctcttcctcctcctcatc 8994471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 9029671 - 9029562
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 115  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  9029671 atgatacttgtgattcttttaatgaaataactttctaaattgactaattatacaaattggggctgctttgatagcaacatatttatgtctagaaaggaga 9029572  T
Q  116 attagagtct 125  Q
    ||||||||||    
T  9029571 attagagtct 9029562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 13001697 - 13001597
Alignment:
Q  23 ttgtgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagag 122  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||| ||||||||||| || |||||||||||||||    
T  13001697 ttgtgattcttttaatgaaatagctttataaattgactaattatacaaattgggggtggtttgatagcatcaaatttatgtataaaaaggagaattagag 13001598  T
Q  123 t 123  Q
    |    
T  13001597 t 13001597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 225 - 326
Target Start/End: Complemental strand, 9019925 - 9019824
Alignment:
Q  225 cactaaaaagtgaacaagaagtccaacaaaccctcaatatcatgcgacagatatttctccgaataaaattatgcttgcttagaattgttgtttggctgct 324  Q
    ||||||| |||||||| |||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  9019925 cactaaagagtgaacaggaagtctaataaaccctcaatatcatgcgacaaatatttctccgaatcaaattatgcttccttagaaatgttgtttggctgct 9019826  T
Q  325 ga 326  Q
    ||    
T  9019825 ga 9019824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 17117642 - 17117741
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 115  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||| |||||| |||| | || ||||||||| ||| ||||||    
T  17117642 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattatacaaattgggggtggtttgatagtaccagatttatgtccagataggaga 17117741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 8978524 - 8978445
Alignment:
Q  275 atatttctccgaataaaattatgcttgcttagaattgttgtttggctgctg-atgttgtgtatagtaaactgttttgaaa 353  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||| || |||| ||||| ||| ||||||||||    
T  8978524 atatttctccgaatcaaattatgcttgcttagaaatgctgtttggctgctgaatattgtatataggaaattgttttgaaa 8978445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 9029524 - 9029477
Alignment:
Q  165 taacatatatatatttttatttaagtggggtgtggatattagacttaa 212  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  9029524 taacatatatatttttttatttaagtggggtgtggatattagacttaa 9029477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 25222390 - 25222341
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  25222390 atgattgttgtgattctttcaatgaaataactttctaaattgactaatta 25222341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 42759753 - 42759810
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaattatacaaatt 73  Q
    ||||| ||||||||||||| ||||||||||||||  ||||||||| |||||| |||||    
T  42759753 atgattgttgtgattctttcaatgaaataactttccaaattgactgattataaaaatt 42759810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 41096693 - 41096733
Alignment:
Q  165 taacatatatatatttttatttaagtggggtgtggatatta 205  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  41096693 taacatatatatatttttatttaagtggggggtgggtatta 41096733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 13001514 - 13001471
Alignment:
Q  169 atatatatatttttatttaagtggggtgtggatattagacttaa 212  Q
    |||||||||| | |||||||||||||||||||||||| ||||||    
T  13001514 atatatatatatatatttaagtggggtgtggatattaaacttaa 13001471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 6530726 - 6530677
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  6530726 atgattgttgtgattctttcaatgaaataccttttcaaattgactgatta 6530677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 19367416 - 19367465
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  19367416 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 19367465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 42411555 - 42411604
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||  ||||||||||||||    
T  42411555 atgattgttgtgattctttaaatgaaatagctttccaaattgactaatta 42411604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 1226415 - 1226462
Alignment:
Q  165 taacatatatatatttt-tatttaagtggggtgtggatattagacttaa 212  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||    
T  1226415 taacatatatattttttttatttaagtggggtgtgg-tattagacttaa 1226462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 42759903 - 42759948
Alignment:
Q  165 taacatatatatatttttatttaagtggggtgtggatattagacttaa 212  Q
    |||||||||||| ||||||||||||||||  |||||||||||| ||||    
T  42759903 taacatatatatttttttatttaagtggg--gtggatattagatttaa 42759948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 1269618 - 1269509
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 115  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||| |||||| || ||||||||||||||||||||    
T  1269618 atgattgttgtgattcttttaatgaaatagcttttcaaattgactaattttacaaattgggggtggtttcatagcatcagatttatgtctagaaaggaga 1269519  T
Q  116 attagagtct 125  Q
    ||||||||||    
T  1269518 attagagtct 1269509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 5560553 - 5560433
Alignment:
Q  13 aatatgatagttgtgattcttttaatgaaataactttttaaattgac--------taattatacaaattggggctggttttatagcaacaaatttatgtc 104  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||        | |||||||||||||||| ||||||  ||||| || |||||||||    
T  5560553 aatatgattgttgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattgggggtggtttggtagcaccagatttatgtc 5560454  T
Q  105 tagaaaggagaattagagtct 125  Q
     ||||| ||||| || |||||    
T  5560453 cagaaatgagaactatagtct 5560433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 1269468 - 1269422
Alignment:
Q  166 aacatatatatatttttatttaagtggggtgtggatattagacttaa 212  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  1269468 aacatatatatatttttatttaagtgaggtgtggatattagacttaa 1269422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 12884134 - 12884183
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||| ||||    
T  12884134 atgattgttgtgattctttcaatgaaatagctttttaaattgactgatta 12884183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 37873815 - 37873876
Alignment:
Q  64 tatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 125  Q
    |||||||||||  | |||||| |||||| ||||||||||||||||||| |||| ||||||||    
T  37873815 tatacaaattgatggtggtttgatagcatcaaatttatgtctagaaagtagaactagagtct 37873876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 15441303 - 15441240
Alignment:
Q  62 attatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 125  Q
    |||||||||||||  | |||||| ||||||  | ||||||||||||||||||||| ||||||||    
T  15441303 attatacaaattgtaggtggtttgatagcattatatttatgtctagaaaggagaactagagtct 15441240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 27703580 - 27703643
Alignment:
Q  62 attatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 125  Q
    |||||||||||||||| |||||| |||||| |||||||||||  | ||| ||||| ||||||||    
T  27703580 attatacaaattgggggtggtttgatagcatcaaatttatgttcaaaaaagagaactagagtct 27703643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 50552404 - 50552357
Alignment:
Q  165 taacatatatatatttttatttaagtggggtgtggatattagacttaa 212  Q
    |||||||||||| ||||||||||||||||| |||| ||||||| ||||    
T  50552404 taacatatatatttttttatttaagtggggggtgggtattagatttaa 50552357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 50552562 - 50552519
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgac 59  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||    
T  50552562 atgattgttgtgattctttcaatgaaataacttttcaaattgac 50552519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 26486380 - 26486477
Alignment:
Q  26 tgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagt 123  Q
    ||||| ||| ||||||||| ||||| | ||| | | |||||||||||||  | |||||| |||||| ||||||||| || |||||| |||| ||||||    
T  26486380 tgattttttcaatgaaatagcttttcagattaagtgattatacaaattgatgatggtttgatagcatcaaatttatttccagaaagtagaactagagt 26486477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 30899723 - 30899674
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||  ||||||||||||||    
T  30899723 atgattgttgtgattctttcaatgaaatagctttccaaattgactaatta 30899674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 33124627 - 33124676
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  33124627 atgattgttgtgattctttcaatgaaatagcttttcaaattgacttatta 33124676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 6150787 - 6150739
Alignment:
Q  17 tgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    |||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  6150787 tgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 6150739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 48722527 - 48722566
Alignment:
Q  165 taacatatatatatttttatttaagtggggtgtggatatta 205  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  48722527 taacatatatat-tttttatttaagtggggggtggatatta 48722566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 42777812 - 42777707
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggaga 115  Q
    ||||| ||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||| |||||| ||| || || |||||||| |||||||||||    
T  42777812 atgattgttgtgattcttttaattaaatagctttctaaattgactaattacacaaattgggggtggtttgatatcatcatatttatgtatagaaaggaga 42777713  T
Q  116 attaga 121  Q
    ||||||    
T  42777712 attaga 42777707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 431 - 527
Target Start/End: Original strand, 44883949 - 44884036
Alignment:
Q  431 ccccgctaccatcgtcatcatgatcaacacgaacttgaatttcaggaagattagcaactgaataattaaacatgttctcctcctcctcttcctccac 527  Q
    ||||||||||||| || |||||||||||||||||| |||         ||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  44883949 ccccgctaccatcatcgtcatgatcaacacgaactcgaa---------gattagcaattgaataattaaacatgttcttctcctcctcctcctccac 44884036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 3628750 - 3628794
Alignment:
Q  22 gttgtgattcttttaatgaaataactttttaaattgactaattat 66  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||    
T  3628750 gttgtgattctttcaatgaaataacttttcaaattgactgattat 3628794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 34523948 - 34524065
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgac--------taattatacaaattggggctggttttatagcaacaaatttatgtctag 107  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||        | |||||||||||||||| |||||| |||| | || ||||||||| ||    
T  34523948 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgtccag 34524047  T
Q  108 aaaggagaattagagtct 125  Q
    | ||||||| || |||||    
T  34524048 ataggagaactaaagtct 34524065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 33452701 - 33452655
Alignment:
Q  165 taacatatatatatttttatttaagtggggtgtggatattagacttaa 212  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  33452701 taacatacatatatttttatttaagcggggtgt-gatattagacttaa 33452655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 39697941 - 39697984
Alignment:
Q  22 gttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||    
T  39697941 gttgtgattctttcaatgaaatagcttttcaaattgactaatta 39697984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 42777649 - 42777615
Alignment:
Q  178 tttttatttaagtggggtgtggatattagacttaa 212  Q
    ||||||||||||| |||||||||||||||||||||    
T  42777649 tttttatttaagtagggtgtggatattagacttaa 42777615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 43968067 - 43968109
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattga 58  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||    
T  43968067 atgattgttgtgattctttcaatgaaataacttttcaaattga 43968109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 3471667 - 3471618
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  3471667 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 3471618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 5869319 - 5869368
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  5869319 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 5869368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 12531626 - 12531577
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| |||||||||  |||||||||||||| ||||    
T  12531626 atgattgttgtgattctttcaatgaaatagatttttaaattgactgatta 12531577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 43926320 - 43926369
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  43926320 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 43926369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 36515159 - 36515211
Alignment:
Q  22 gttgtgattcttttaatgaaataactttttaaattgactaattatacaaattg 74  Q
    ||||||||||||| |||||||||  |||||||||| ||| ||||| |||||||    
T  36515159 gttgtgattctttcaatgaaatagttttttaaattaactgattattcaaattg 36515211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 44882742 - 44882790
Alignment:
Q  225 cactaaaaagtgaacaagaagtccaacaaaccctcaatatcatgcgaca 273  Q
    ||||||| | |||||| |||||||||  |||||||||||||||||||||    
T  44882742 cactaaagaatgaacaggaagtccaatcaaccctcaatatcatgcgaca 44882790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 11088614 - 11088506
Alignment:
Q  16 atgatagttgtgattcttttaat-gaaataactttttaaattgactaattatacaaattggggctggttttatagcaacaaatttatgtctagaaaggag 114  Q
    ||||| |||||||||||||| || |||||| ||||| ||||||||| |||||| ||||||||| ||||||  ||||| || ||||||||| |  ||||||    
T  11088614 atgattgttgtgattctttttattgaaatagcttttcaaattgactgattatataaattgggggtggtttggtagcatcagatttatgtcca--aaggag 11088517  T
Q  115 aattagagtct 125  Q
    |||||||||||    
T  11088516 aattagagtct 11088506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 29401207 - 29401158
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||| ||||    
T  29401207 atgattgttgtgattctttcaatgaaataacttttcaaattgactgatta 29401158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 30915363 - 30915480
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgact--------aattatacaaattggggctggttttatagcaacaaatttatgtctag 107  Q
    ||||| ||||||||||||| ||| ||||| ||||| |||||||||        ||||||||||||||  |  ||||| |||||| |||||||||||| ||    
T  30915363 atgattgttgtgattctttcaattaaatagcttttcaaattgactgattaagtaattatacaaattgatgggggtttgatagcatcaaatttatgtccag 30915462  T
Q  108 aaaggagaattagagtct 125  Q
    |||| |||| ||||||||    
T  30915463 aaagtagaactagagtct 30915480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 6360670 - 6360624
Alignment:
Q  165 taacatatatatatttttatttaagtggggtgtggatattagacttaa 212  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  6360670 taacatatatat-tttttatttaagtggggggtggatattagatttaa 6360624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 57755 - 57706
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| |||| |||||||||| ||||    
T  57755 atgattgttgtgattctttgaatgaaatagctttctaaattgactgatta 57706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 628092 - 628141
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  628092 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 628141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 12614713 - 12614762
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  12614713 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 12614762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 31861067 - 31861019
Alignment:
Q  17 tgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    |||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  31861067 tgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 31861019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 32956836 - 32956725
Alignment:
Q  22 gttgtgattcttttaatgaaataactttttaaattgactaatta--------tacaaattggggctggttttatagcaacaaatttatgtctagaaagga 113  Q
    ||||||||||||| |||||||||||||| |||||||||| ||||        || ||||||||| |||||| |||||| || ||||||||| ||||||||    
T  32956836 gttgtgattctttcaatgaaataactttataaattgactgattaaatgattataaaaattgggggtggtttgatagcatcagatttatgtccagaaagga 32956737  T
Q  114 gaattagagtct 125  Q
    ||| ||||||||    
T  32956736 gaactagagtct 32956725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 26633430 - 26633313
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta--------tacaaattggggctggttttatagcaacaaatttatgtctag 107  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||        |||||||||  | ||||||||||||| |||||||||||| ||    
T  26633430 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgatggtggttttatagcatcaaatttatgtccag 26633331  T
Q  108 aaaggagaattagagtct 125  Q
    |||| |||| ||||||||    
T  26633330 aaagtagaactagagtct 26633313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 30739190 - 30739141
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  30739190 atgatcgttgtgattcttttaatgaaataacttttcaaattgactgatta 30739141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 8358288 - 8358340
Alignment:
Q  13 aatatgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||    
T  8358288 aatatgattgttgtgattctttcaatgagataactttttaaattgactgatta 8358340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 18895400 - 18895443
Alignment:
Q  22 gttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  18895400 gttgtgattctttcaatgaaataactttttaaattgactgatta 18895443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 40737993 - 40738103
Alignment:
Q  21 agttgtgattcttttaatgaaataactttttaaattgac--------taattatacaaattggggctggttttatagcaacaaatttatgtctagaaagg 112  Q
    |||||||||||||| ||| ||||| ||||||||||||||        |||||||||||||||  | |||||| |||||| |||||||||||| | ||||     
T  40737993 agttgtgattctttcaataaaatagctttttaaattgactgattaagtaattatacaaattgatggtggtttgatagcatcaaatttatgtcaaaaaagt 40738092  T
Q  113 agaattagagt 123  Q
    |||| ||||||    
T  40738093 agaactagagt 40738103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 42312070 - 42312029
Alignment:
Q  22 gttgtgattcttttaatgaaataactttttaaattgactaat 63  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  42312070 gttgtgattcttttaatgaaatagcttttcaaattgactaat 42312029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 44876152 - 44876201
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||| ||||    
T  44876152 atgattgttgtgattcttttaatgaaatagctttctaaattgactgatta 44876201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 9479188 - 9479079
Alignment:
Q  22 gttgtgattcttttaatgaaataactttttaaattgact--------aattatacaaattggggctggttttatagcaacaaatttatgtctagaaagga 113  Q
    ||||||||||||| || ||||||  ||||||||||||||        ||||||||||||||  | |||||| |||||| |||||||||||| |||||| |    
T  9479188 gttgtgattctttcaacgaaatagttttttaaattgactgattaagtaattatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagta 9479089  T
Q  114 gaattagagt 123  Q
    ||| ||||||    
T  9479088 gaactagagt 9479079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 11672493 - 11672447
Alignment:
Q  165 taacatatatatatttttatttaagtggggtgtggatattagacttaa 212  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  11672493 taacatatatat-tttttatttaagtggggggtggatattagatttaa 11672447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 1366076 - 1366027
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| |||||||||||||  |||||||||||||| ||||||||| ||||    
T  1366076 atgattgttgtgattctttctatgaaataacttttcaaattgactgatta 1366027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 6380244 - 6380285
Alignment:
Q  171 atatatatttttatttaagtggggtgtggatattagacttaa 212  Q
    |||||| ||||||||||||| ||| |||||||||||||||||    
T  6380244 atatatttttttatttaagtagggagtggatattagacttaa 6380285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 26282539 - 26282588
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  26282539 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 26282588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 33419121 - 33419158
Alignment:
Q  23 ttgtgattcttttaatgaaataactttttaaattgact 60  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  33419121 ttgtgattctttcaatgaaataacttttcaaattgact 33419158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 33910131 - 33910082
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  33910131 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 33910082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 40001694 - 40001742
Alignment:
Q  17 tgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    |||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  40001694 tgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 40001742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 43154791 - 43154834
Alignment:
Q  22 gttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  43154791 gttgtgattcttttaatgaaataactttttaaattgactgatta 43154834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 5545396 - 5545279
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgac--------taattatacaaattggggctggttttatagcaacaaatttatgtctag 107  Q
    ||||| ||||||||||||||||||||||| ||||  ||||||||        | |||||||||||||| | |||||| || ||| |||||||||||| ||    
T  5545396 atgattgttgtgattcttttaatgaaatagctttccaaattgaccgattaagtgattatacaaattggtggtggtttgatggcatcaaatttatgtccag 5545297  T
Q  108 aaaggagaattagagtct 125  Q
    | || |||||||||||||    
T  5545296 acagaagaattagagtct 5545279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 21791544 - 21791593
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||| ||||    
T  21791544 atgattgttgtgattctttcaatgaaataacttttcaaattgactgatta 21791593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 10575520 - 10575569
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||| ||| |||||||||||||| |||||||||| ||||    
T  10575520 atgattgttgtgattatttcaatgaaataactttctaaattgactgatta 10575569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 11681739 - 11681788
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||||||||  ||||||||| ||||    
T  11681739 atgattgttgtgattctttcaatgaaataactttccaaattgactgatta 11681788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 11690018 - 11690067
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||||||||  ||||||||| ||||    
T  11690018 atgattgttgtgattctttcaatgaaataactttccaaattgactgatta 11690067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 53011779 - 53011730
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||||||||||||| ||||  ||||||||| ||||    
T  53011779 atgattgttgtgattcttttaatgaaatagctttccaaattgactgatta 53011730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 22423694 - 22423634
Alignment:
Q  65 atacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 125  Q
    ||||||||||  | |||||| |||||| |||||||||||| |||||| |||| ||||||||    
T  22423694 atacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaactagagtct 22423634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 42009265 - 42009376
Alignment:
Q  22 gttgtgattcttttaatgaaataactttttaaattgac--------taattatacaaattggggctggttttatagcaacaaatttatgtctagaaagga 113  Q
    ||||||||||||| ||||||||||||||||||||||||        | |||||||||||||  | |||||| |||||| |||||||||||| |||||| |    
T  42009265 gttgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagta 42009364  T
Q  114 gaattagagtct 125  Q
    ||| || |||||    
T  42009365 gaactaaagtct 42009376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 21596348 - 21596285
Alignment:
Q  62 attatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 125  Q
    |||||||||||||||  |||||| |||||| |  ||||||||| ||||||||||||||||||||    
T  21596348 attatacaaattgggagtggtttgatagcatctgatttatgtccagaaaggagaattagagtct 21596285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 1649882 - 1649941
Alignment:
Q  62 attatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattaga 121  Q
    |||||||||||||||| || ||| |||||| || ||||||||||||||| ||||| ||||    
T  1649882 attatacaaattgggggtgatttgatagcaccagatttatgtctagaaaagagaactaga 1649941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 8364081 - 8364035
Alignment:
Q  165 taacatatatatatttttatttaagtggggtgtggatattagacttaa 212  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  8364081 taacatatatat-tttttatttaagtggggggtggatattagatttaa 8364035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 19965884 - 19965992
Alignment:
Q  23 ttgtgattcttttaatgaaataactttttaaattgactaatta--------tacaaattggggctggttttatagcaacaaatttatgtctagaaaggag 114  Q
    |||||||||||||||||||||| ||||| || || ||||||||        ||||||||||   |||||| |||||| || ||||||||| | |||||||    
T  19965884 ttgtgattcttttaatgaaatagcttttcaatttaactaattaagtgattatacaaattggcagtggtttgatagcatcagatttatgtccaaaaaggag 19965983  T
Q  115 aattagagt 123  Q
    |||||||||    
T  19965984 aattagagt 19965992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 15987267 - 15987225
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattga 58  Q
    ||||||||||| ||||||||||||||||||||||  |||||||    
T  15987267 atgatagttgtaattcttttaatgaaataactttcgaaattga 15987225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 29387751 - 29387793
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattga 58  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||    
T  29387751 atgattgttgtgattctttcaatgaaataacttttcaaattga 29387793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 8364239 - 8364190
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||||||||  ||||||||| ||||    
T  8364239 atgattgttgtgattctttcaatgaaataactttccaaattgactgatta 8364190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 41707052 - 41707101
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  41707052 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 41707101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 51939553 - 51939602
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  51939553 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 51939602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 54430607 - 54430570
Alignment:
Q  28 attcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  54430607 attcttttaatgaaataacttttcaaattgactgatta 54430570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 23067730 - 23067766
Alignment:
Q  24 tgtgattcttttaatgaaataactttttaaattgact 60  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  23067730 tgtgattctttaaatgaaataacttttcaaattgact 23067766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 29156257 - 29156208
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  29156257 atgattgttgtgattctttcaatgaaataactttttaaattgactgatta 29156208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 27351361 - 27351299
Alignment:
Q  63 ttatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagtct 125  Q
    ||||||||||||| | |||||| |||||| |||||||||||  ||||||||||| ||||||||    
T  27351361 ttatacaaattggaggtggtttgatagcaccaaatttatgttcagaaaggagaactagagtct 27351299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 33281730 - 33281692
Alignment:
Q  27 gattcttttaatgaaataactttttaaattgactaatta 65  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  33281730 gattctttcaatgaaataactttttaaattgactaatta 33281692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 13656277 - 13656228
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||| ||||    
T  13656277 atgattgttgtgattctttcaatgaaataacttttcaaattgactgatta 13656228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 19099311 - 19099360
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||| ||||    
T  19099311 atgattgttgtgattctttcaatgaaatagctttttaaattgactgatta 19099360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 23069233 - 23069172
Alignment:
Q  62 attatacaaattggggctggttttatagcaacaaatttatgtctagaaaggagaattagagt 123  Q
    |||||||||||||||| ||||||  ||||| || ||||||||  ||||||||||||||||||    
T  23069233 attatacaaattgggggtggtttgctagcatcatatttatgttcagaaaggagaattagagt 23069172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 10591270 - 10591319
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||||||||| ||||| ||| ||||    
T  10591270 atgattgttgtgattctttcaatgaaataacttttcaaattaactgatta 10591319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 13474697 - 13474648
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||| ||||||| ||||||||| ||||    
T  13474697 atgattgttgtgattctttcaatgaaacaacttttcaaattgactgatta 13474648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 17513933 - 17513982
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| | ||||||||||||| ||||||||| ||||    
T  17513933 atgattgttgtgattctttcagtgaaataacttttcaaattgactgatta 17513982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 20976052 - 20976003
Alignment:
Q  16 atgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  20976052 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgatta 20976003  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 7390406 - 7390446
Alignment:
Q  25 gtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  7390406 gtgattctttcgatgaaataactttttaaattgactgatta 7390446  T

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Target: scaffold0126 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 16780 - 16728
Alignment:
Q  13 aatatgatagttgtgattcttttaatgaaataactttttaaattgactaatta 65  Q
    |||||||| ||||||||||||| ||||||||| ||||| ||||||||| ||||    
T  16780 aatatgatcgttgtgattctttcaatgaaatagcttttcaaattgactgatta 16728  T

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