View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13200_low_8 (Length: 523)
Name: NF13200_low_8
Description: NF13200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13200_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 50275418 - 50275919
Alignment:
| Q |
18 |
atttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctgttgacaagaa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50275418 |
atttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaaccttccattccttgagataatgcatcttcagcctgttgacaagaa |
50275517 |
T |
|
| Q |
118 |
tgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50275518 |
tgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaa |
50275617 |
T |
|
| Q |
218 |
gaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttgtttttagcctct----ataaagtcttgatgtaaccgcttattca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
50275618 |
gaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattca |
50275717 |
T |
|
| Q |
314 |
ttctaaatatcatttctattttactatctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaag |
413 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50275718 |
ttctaaatatcatttctattttactatctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaag |
50275817 |
T |
|
| Q |
414 |
ttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatg |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275818 |
ttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatg |
50275917 |
T |
|
| Q |
514 |
ct |
515 |
Q |
| |
|
|| |
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|
| T |
50275918 |
ct |
50275919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 50279442 - 50279943
Alignment:
| Q |
18 |
atttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctgttgacaagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
50279442 |
atttccagatccagtggacgtggaggaaagtgtctctgaaagagattgttgcaaaccttccattccttgagataatgcatcttcagcctgttgacaagaa |
50279541 |
T |
|
| Q |
118 |
tgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
50279542 |
tgctgcagattgaagatcgccatcaattgctgatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaa |
50279641 |
T |
|
| Q |
218 |
gaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttgtttttagcctct----ataaagtcttgatgtaaccgcttattca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
50279642 |
gaagtaagagttaacaaaatgtatatatttgttagttaattactagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattca |
50279741 |
T |
|
| Q |
314 |
ttctaaatatcatttctattttactatctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaag |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
50279742 |
ttctaaatatcatttctattttactatctaaacttttctcttatccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaag |
50279841 |
T |
|
| Q |
414 |
ttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279842 |
ttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatg |
50279941 |
T |
|
| Q |
514 |
ct |
515 |
Q |
| |
|
|| |
|
|
| T |
50279942 |
ct |
50279943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 411 - 515
Target Start/End: Complemental strand, 14462668 - 14462564
Alignment:
| Q |
411 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462668 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
14462569 |
T |
|
| Q |
511 |
atgct |
515 |
Q |
| |
|
||||| |
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|
| T |
14462568 |
atgct |
14462564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 401 - 515
Target Start/End: Complemental strand, 22610283 - 22610169
Alignment:
| Q |
401 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagc |
500 |
Q |
| |
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|||||||||||| ||| |||||||| ||| ||||| |||| || ||| |||||||| | |||||||||||||||||| | || |||||||||||||||| |
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| T |
22610283 |
tcaccttgagaatttcagatgaacgaaatgcaccatgccaaataaaaaatctttctactggtgtcttccacaacccatagagcatgtgaaatacatcagt |
22610184 |
T |
|
| Q |
501 |
ctttgcacctatgct |
515 |
Q |
| |
|
|||||| |||||||| |
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| T |
22610183 |
ctttgcccctatgct |
22610169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 22610691 - 22610624
Alignment:
| Q |
40 |
gaggaaagtgtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctg |
107 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| |
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|
| T |
22610691 |
gaggaaagtgtttctaaaagagattgtttcaatgcttccatgccgtgagataaagcatcctcagcctg |
22610624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 472
Target Start/End: Complemental strand, 14931491 - 14931420
Alignment:
| Q |
401 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccaca |
472 |
Q |
| |
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|||||||||||||||| || || || || ||||||||||| | |||||| ||||| |||||||| ||||||| |
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|
| T |
14931491 |
tcaccttgagaagttcagacgaccgaaaaccaccaagccataagaaacacctttcagcaggtgttttccaca |
14931420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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