View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13201_high_4 (Length: 659)
Name: NF13201_high_4
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13201_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 18 - 649
Target Start/End: Original strand, 14147353 - 14147990
Alignment:
| Q |
18 |
aaatgctggttttgtattgattgatatttcttcaaaatcttattgtttatcagtcttaataacatcaaacattttctagtactacgtgtgaaaatttaat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14147353 |
aaatgctggttttgtattgattgatatttcttcaaaatcttattgtttatcagtcttaataacatcaaacattttctagtactacgtgtgaaaatttaat |
14147452 |
T |
|
| Q |
118 |
tttctagcattcatgggcatggaatacttctttttggagtgtaatttctccttccatgtttgtatagtccaat-atctattgcataaattcagctatacc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
14147453 |
tttctagcattcatgggcatggaatacttctttttggagtgtaatttctccttccatgtttgtatagtccaattatccattgcataaattcagctatacc |
14147552 |
T |
|
| Q |
217 |
agaatatgtcgttggatttaaaatggtttcaagtt-----ttaatcataggaaaatgcagccatagtggtagctgtctgtgcacttgtgatttcggattt |
311 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14147553 |
agaatatgttgttggatttaaaatggtttcaagttgtagtttaatcatgggcaaatgcagccatagtggtagctgtctgtgcacttgtgatttcggattt |
14147652 |
T |
|
| Q |
312 |
gtggactacttgcagttaggattataccacagccagggaagatcttacatagcacttaatttctttacatattgtcaagtatgttgttatgtttacctgt |
411 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14147653 |
gtggactacttgcagttagcattataccacagccagggaagatcttacataacacataatttctttacatattgtcaagtatgttgttatgtttacctgt |
14147752 |
T |
|
| Q |
412 |
tggccaattgatatgaatttggttgagtcatgtttaaatatcagatgttgtccatgttcagtgttttatgcgactacattgcgtcaaacagtagcttgaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14147753 |
tggccaattgatatgaatttggttgagtcatgtttaaatatcagatgttgtccatgttcagtgttttatgcgactacattgcgtcaaacagtagcttgaa |
14147852 |
T |
|
| Q |
512 |
tggcttgttcttggtatgatttgagagcgatattccttaactgcttttggatattataaccttgtagagtaatttgggaatgcatgtaatgggattctaa |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14147853 |
tggcttgttcttggtatgatttgagagcgatattccttaactgcttttggatattataaccttgtagagtaatttggggatgcatgtaatgggattctaa |
14147952 |
T |
|
| Q |
612 |
cctctggagtggacttcttactaatttttggccctatg |
649 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
14147953 |
cctctggagtggacttcttactaatttttggccttatg |
14147990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 26 - 462
Target Start/End: Original strand, 14153828 - 14154269
Alignment:
| Q |
26 |
gttttgtattgattgatatttcttcaaaatctta-ttgtttatcagtcttaataacatcaaacattttctagtactacgtgtgaaaatttaattttctag |
124 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||| |||||||| ||| ||||||||||||||||| |
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| T |
14153828 |
gttttgtattgattgatatttcatcaaaatcttaattgtttatcagtcttaacaacatcaaatatttttcagtactacatgtaaaaatttaattttctag |
14153927 |
T |
|
| Q |
125 |
cattcatgggcatggaatacttctttttggagtgtaatttctccttccatgtttgtatagtccaat-atctattgcataaattcagctataccagaatat |
223 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14153928 |
catttatgggcatggaatacttctttttggagtgtcatttatccttccatgtatgtatagtccaataatctattgcataaattcagctataccagaatat |
14154027 |
T |
|
| Q |
224 |
gtcgttggatttaaaatggtttcaagt-----tttaatcataggaaaatgcagccatagtggtagctgtctgtgcacttgtgatttcggatttgtggact |
318 |
Q |
| |
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|| |||||||||||||||||||||||| ||||||||| | || |||||||||||||| || |||||||||||| ||||||||||||||||| |
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| T |
14154028 |
gttgttggatttaaaatggtttcaagttgtagtttaatcatgg------gcggccatagtggtagccgtatgtgcacttgtggtttcggatttgtggact |
14154121 |
T |
|
| Q |
319 |
acttgcag-------ttaggattataccacagccagggaagatcttacatagcacttaatttctttacatattgtcaagtatgttgttatgtttacctgt |
411 |
Q |
| |
|
|||||||| |||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |
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|
| T |
14154122 |
acttgcagttagcaattagcattatgccacagtcagggcagatcttacatagcacttaatttctttacatattgccaagta---tgttatgtttgcctgt |
14154218 |
T |
|
| Q |
412 |
tggccaattgatatgaatttggttgagtcatgtttaaatatcagatgttgt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
14154219 |
tggccaattgatatgaatttggttgagtcatgtttaaatatcagctgttgt |
14154269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 43 - 244
Target Start/End: Original strand, 14495649 - 14495858
Alignment:
| Q |
43 |
atttcttcaaaatcttattgtttatcagtcttaataacatcaaacatttt-------ctagtactacgtgtgaaaat-ttaattttctagcattcatggg |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||| | |||||||| ||| |||| || ||||||||||||| |||| |
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| T |
14495649 |
atttcttcaaaatcttattgtttatcagtcttaataacatcaagtaattttccagttccagtactacatgtaaaaaaattgattttctagcatttttggg |
14495748 |
T |
|
| Q |
135 |
catggaatacttctttttggagtgtaatttctccttccatgtttgtatagtccaa-tatctattgcataaattcagctataccagaatatgtcgttggat |
233 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||| ||||| || || || ||||||| |||||||||| |||||||||| ||||| | |
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| T |
14495749 |
catggaatacttctttttggagtgtcatttctcctttcatgtttgtttagtctaacaatata-tgcataagttcagctatatcagaatatgttgttgggt |
14495847 |
T |
|
| Q |
234 |
ttaaaatggtt |
244 |
Q |
| |
|
||||||||||| |
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| T |
14495848 |
ttaaaatggtt |
14495858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 459 - 566
Target Start/End: Original strand, 14154296 - 14154403
Alignment:
| Q |
459 |
ttgtccatgttcagtgttttatgcgactacattgcgtcaaacagtagcttgaatggcttgttcttggtatgatttgagagcgatattccttaactgcttt |
558 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||| |||| ||||||||||||||||||| || || || |||||||| || ||||| ||||||||| |
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| T |
14154296 |
ttgtccatgttcagtattgtatgcgactacattacgttaaacggtagcttgaatggcttgtttttagtgtgttttgagagatattttcctcaactgcttt |
14154395 |
T |
|
| Q |
559 |
tggatatt |
566 |
Q |
| |
|
||| |||| |
|
|
| T |
14154396 |
tggttatt |
14154403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 14496073 - 14496126
Alignment:
| Q |
403 |
tttacctgttggccaattgatatgaatttggttgagtcatgtttaaatatcaga |
456 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
14496073 |
tttacctgttagccaattgatatgaatttagttgagtcatgattaaatatcaga |
14496126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 14480291 - 14480200
Alignment:
| Q |
163 |
ttctccttccatgtttgtatagtccaat-atctattgcataaattcagc--tataccagaatatgtcgttggatttaaaatggtttcaagtt |
251 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||| |||| | ||||| ||||||||| ||||| ||||| |||||| ||||| |
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|
| T |
14480291 |
ttctccttccatgtttgtttagtccaataatctattgcatattttcatctatatacgagaatatgtgtttggacttaaagtggttttaagtt |
14480200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 14521642 - 14521705
Alignment:
| Q |
163 |
ttctccttccatgtttgtatagtccaata-tctattgcataaattcagctataccagaatatgt |
225 |
Q |
| |
|
|||||||| |||||| || | |||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
14521642 |
ttctcctttcatgttggttttgtccaataatctattgcataaactcagctataccagattatgt |
14521705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 619
Target Start/End: Original strand, 14496244 - 14496308
Alignment:
| Q |
555 |
cttttggatattataaccttgtagagtaatttgggaatgcatgtaatgggattctaacctctgga |
619 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | |||||||||||||| | |||||||||| |
|
|
| T |
14496244 |
cttttggatattataaccttgtattgtaatttcgtgttgcatgtaatgggaattcaacctctgga |
14496308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 24741954 - 24742015
Alignment:
| Q |
155 |
agtgtaatttctccttccatgtttgtatagtccaat-atctattgcataaattcagctatac |
215 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||| |||||| |||||| || |||||||| |
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|
| T |
24741954 |
agtgttatttcttcttccatgtttgtttagtccaataatctatggcataagttaagctatac |
24742015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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