View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13201_high_5 (Length: 630)
Name: NF13201_high_5
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13201_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Original strand, 34875549 - 34876153
Alignment:
| Q |
1 |
caactcctctcttataacagtgaaagaatcgcacagtttcaattctatcaccaactttgagctacaacaaacaacaacaaaatgaaatatgtaaataaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34875549 |
caactcctctcttataacagtgaaagaatcgcacagtttcaattctatcaccaactttgagctacaacaaacaacaacaaaatgaaatatgtaaataaat |
34875648 |
T |
|
| Q |
101 |
catcaacaaggaataattccaagttctttcaagatttatacatatacaaaaacataacaaaaaccagttacctcaacagatacatcagtatcccatgcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34875649 |
catcaacaaggaataattccaagttctttcaagatttatacatatacaaaaacataacaaaaaatagttacctcaacagatacatcagtatcccatgcat |
34875748 |
T |
|
| Q |
201 |
ccttgtattgatcataacgcggtgacacagtcataacacggtgcccatttccctaaaataattaaattatcacaaaatcatcatcaggtaacaattacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34875749 |
ccttgtattgatcataacgcggtgacacagtcataacacggtgcccatttccctaaaataattaaattatcacaaaatcatcatcaagtaacaattacca |
34875848 |
T |
|
| Q |
301 |
aaagtaaaacacaataaaaagaatagtatgtgtctatgcaacacgaacatttcagattgaagttgtgtctatgttcacaaacacgtgtgattacattcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34875849 |
aaagtaaaacacaataaaaagaatagtatgtgtctatgcaacacgaacatttcagattgaagttgtgtctatgttcacaaacacgtgtgattacattcaa |
34875948 |
T |
|
| Q |
401 |
ttcaattcctttaattttnnnnnnnttatttctaatgccacatatcagtgtcatatccgatgtcaatgcatgtattagtagtaaatttgctaaattcaga |
500 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34875949 |
ttcaattcctttcattttaaaaaaattatttctaatgccacatatcagt---------gatgtccatgcatgtattagtagtaaatttgctaaattcaga |
34876039 |
T |
|
| Q |
501 |
gtgaaccatcgtgattttccaaacgccatacacaaaattacaatgacacagtgacactgattttgtcaaagccggtgtaaatttaaacataaggataaaa |
600 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34876040 |
gtgaaccatcgtgattttccaaaagctatacacaaaattacaatgacacagtgacacagattttgtcaaagccggtgtaaatttaaacataaggataaaa |
34876139 |
T |
|
| Q |
601 |
ttgaaatgtaaaac |
614 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34876140 |
ttgaaatgtaaaac |
34876153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University