View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13201_high_7 (Length: 525)
Name: NF13201_high_7
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13201_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 296 - 510
Target Start/End: Complemental strand, 13889634 - 13889417
Alignment:
| Q |
296 |
attctcatatcgaaatgcattttctctagggtattt-agttgctattttggctatttgagtaagacttgcatgaatgaatgc--ttactaagttgaattg |
392 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13889634 |
attctcatatcgaactgcattttctctagggtattttagttgctattttggctatttgagtaagacttgcatgaatgaatgcatttactaagttgaattg |
13889535 |
T |
|
| Q |
393 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889534 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
13889435 |
T |
|
| Q |
493 |
aacatgtatccgtctgtg |
510 |
Q |
| |
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|||||||||||||||||| |
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| T |
13889434 |
aacatgtatccgtctgtg |
13889417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 296 - 510
Target Start/End: Complemental strand, 14029759 - 14029542
Alignment:
| Q |
296 |
attctcatatcgaaatgcattttctctagggtattt-agttgctattttggctatttgagtaagacttgcatgaatgaatgc--ttactaagttgaattg |
392 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14029759 |
attctcatatcgaactgcattttctctagggtattttagttgctattttggctatttgagtaagacttgcatgaatgaatgcatttactaagttgaattg |
14029660 |
T |
|
| Q |
393 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14029659 |
gttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaaggg |
14029560 |
T |
|
| Q |
493 |
aacatgtatccgtctgtg |
510 |
Q |
| |
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|||||||||||||||||| |
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| T |
14029559 |
aacatgtatccgtctgtg |
14029542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 13889873 - 13889693
Alignment:
| Q |
20 |
ctatgtatccaccgtgttgtcgaatttcgaaggagattttgataattggaagatttccttcactcctattagggtcggattgttcaatgtgctcgttagt |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889873 |
ctatgtatccaccgtgttgtcgaatttcaaaggagattttgataattggaagatttccttcactcctattagggtcggattgttcaatgtgctcgttagt |
13889774 |
T |
|
| Q |
120 |
gaggatcgttacaaagtttttgattcgtcgttgcattttcaagttgaaccaggtaaaatcaaaacccttacttaactggta |
200 |
Q |
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| T |
13889773 |
gaggatcgttacaaagtttttgattcgtcgttgcattttcaagttgaaccaggtaaaatcaaaacccttacttaactggta |
13889693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 14029998 - 14029818
Alignment:
| Q |
20 |
ctatgtatccaccgtgttgtcgaatttcgaaggagattttgataattggaagatttccttcactcctattagggtcggattgttcaatgtgctcgttagt |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14029998 |
ctatgtatccaccgtgttgtcgaatttcaaaggagattttgataattggaagatttccttcactcctattagggtcggattgttcaatgtgctcgttagt |
14029899 |
T |
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| Q |
120 |
gaggatcgttacaaagtttttgattcgtcgttgcattttcaagttgaaccaggtaaaatcaaaacccttacttaactggta |
200 |
Q |
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| T |
14029898 |
gaggatcgttacaaagtttttgattcgtcgttgcattttcaagttgaaccaggtaaaatcaaaacccttacttaactggta |
14029818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 13889682 - 13889632
Alignment:
| Q |
186 |
cttacttaactggtagaaagacgagcacgctagtgtgtgtctatctgtatt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13889682 |
cttacttaactggtagaaagacgagcacgctagtgtgtgtctatctgtatt |
13889632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 14029807 - 14029757
Alignment:
| Q |
186 |
cttacttaactggtagaaagacgagcacgctagtgtgtgtctatctgtatt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14029807 |
cttacttaactggtagaaagacgagcacgctagtgtgtgtctatctgtatt |
14029757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 7691133 - 7690899
Alignment:
| Q |
20 |
ctatgtatccaccgtgttgtcgaatttcgaaggagattttgataattggaagatttccttcactcctattagggtcggattgttcaatgtgctcgttagt |
119 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||| |
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| T |
7691133 |
ctatgtatcaacagtgttgtcgaatttcgaaggagattttgatcattggaagatttccttcactcctattaaggttggactgttcaatgtgctcattagt |
7691034 |
T |
|
| Q |
120 |
gaggatcgttacaaagtttttgattcgtcgttgcattttcaagttgaaccaggtaaaatcaaaaccc-ttacttaactggtagaaagacgagcacgctag |
218 |
Q |
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|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||| ||| |||||||| |||| ||| |
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| T |
7691033 |
gaggatcgctacaaagtttttgattcatcgttgcatttccaagttgaaccaggtataatcaaaaccctttacttatttggcagaaagacaagcattttag |
7690934 |
T |
|
| Q |
219 |
tgtgtgtctatctgtatttctttgtgcgtatttta |
253 |
Q |
| |
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|||||| ||||| |||||||||||||||||||| |
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| T |
7690933 |
tgtgtgcttatctacatttctttgtgcgtatttta |
7690899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 311 - 503
Target Start/End: Complemental strand, 7690677 - 7690487
Alignment:
| Q |
311 |
tgcattttctctagggtattt-agttgctattttggctatttgagtaagacttgcatgaatgaatgcttactaagttgaattggttagtgcatatcatga |
409 |
Q |
| |
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|||| ||||| |||||||||| |||||||| |||||| |||||||||||| || |||||||||| | ||||||||||||| ||| || |||||||||| |
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| T |
7690677 |
tgcaatttctttagggtattttagttgctaatttggcgatttgagtaagatgtgtatgaatgaat--tcactaagttgaattagttggttcatatcatga |
7690580 |
T |
|
| Q |
410 |
tgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggttgatgttgttattctatgattgaagggaacatgtatcc |
503 |
Q |
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||| |||||||||||||| ||||||| |||| ||| ||| |||||||| || || ||||| |||| ||||| |||||||||||||||||| |
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|
| T |
7690579 |
tgt-tatacataatgtaggttgattcagtttcggtacgtgttcattaattactgttttatgttaatattgtatgactgaagggaacatgtatcc |
7690487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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