View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13201_low_1 (Length: 1117)
Name: NF13201_low_1
Description: NF13201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13201_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 782; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 19 - 1101
Target Start/End: Original strand, 26016903 - 26017996
Alignment:
| Q |
19 |
ctcccaacctcttcttcttcttcacactcctcgccggttttgaagaaaaagagacctgctaaacttgatatacctgttgcttctctcattgttgagcttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26016903 |
ctcccaacctcttcttcttcttcacactcctcgccggttttgaagaaaaagagacctgctaaacttgatatacctgttgcttctctcattgttgagcttc |
26017002 |
T |
|
| Q |
119 |
caccagcagtaccatctccgtcggcagcgaaggatgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatgga |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26017003 |
caccagcagtaccatctcggtcggcagcgaaggatgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatgga |
26017102 |
T |
|
| Q |
219 |
ggatcgttactctgcttctcttgatcttcatggacaatctaaacaggtaacttcatgggttgcatggatttgttcatcnnnnnnnnnnnnnnn--atact |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26017103 |
ggatcgttactctgcttctcttgatcttcatggacaatctaaacaggtaacttcatgggttgcatggatttgttcatctttttttttttttttttatact |
26017202 |
T |
|
| Q |
317 |
atatagatttattaaacaaatttggaaaggtcttattgaatttatggttaatgggatttacaaaatggatgcatgtgcaaggaccaatatatagtctaag |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
26017203 |
atatagatttattaaacaaatttggaaaggtcttattaaatttatggttaatgggatttacaaaatggatacatgtgtaaggaccaatatatagtctaag |
26017302 |
T |
|
| Q |
417 |
atttttgtttgtgattggtacaggcnnnnnnnggcatatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgt |
516 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||| |
|
|
| T |
26017303 |
atttttgtttgtgattggtacaggcattttttggcatatttgatggacatggaggtacaaaagcttcggaattcgcggcacagaacttggaaaagaatgt |
26017402 |
T |
|
| Q |
517 |
gttagaggaagtaatcagaagagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26017403 |
gttagaggaagtaatcagaagagatgaaagtgatattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaagatcttaat |
26017502 |
T |
|
| Q |
617 |
ggtggctcttgctgcgtaacagcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctg |
716 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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|
| T |
26017503 |
ggtggctcttgctgtgtaacagcatttattaggaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcatcagtagaggaggtgttgctg |
26017602 |
T |
|
| Q |
717 |
aggccttaacatctgatcacaaaccttcgaggaaagacgaaaaggaacggattgaaactcaggtaagtg---------atgatgatgatggcgattttcc |
807 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||||||| || ||||||||||| || ||||| | |
|
|
| T |
26017603 |
aggccttaacgtcggatcacaaaccttcaaggaaagacgaaaaagaacgaattgaaactcaggtaattgattatgataatgatgatgatagcaatttttc |
26017702 |
T |
|
| Q |
808 |
tgtttgtctttcgtaattgaaacctttgtttgtagtttaggatatcttaaaggtactaaattagttttgaa----nnnnnnnagggaggatatgttgata |
903 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||||||| || | |||||||| | ||||||||||| ||||||||||||| |||| |
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|
| T |
26017703 |
cgtttgtcgttggtaattgaaacc----tttgtagtttaggatctcatgaaggtacttagttagttttgaaatttattttgtagggaggatatgtagata |
26017798 |
T |
|
| Q |
904 |
tgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgatagcagagcctgagaccaa |
1003 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
26017799 |
tgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggagatagacacatgaaacaatatgtgatagcagaacctgagaccaa |
26017898 |
T |
|
| Q |
1004 |
agtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatgttctt |
1101 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26017899 |
agtactcagaattgaacctcatcatgactttttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatgttctt |
26017996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 449 - 782
Target Start/End: Original strand, 26002523 - 26002856
Alignment:
| Q |
449 |
ggcatatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtg |
548 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
26002523 |
ggcatatttgatggacatggaggtacaaaagcttcggaattcgcggcacagaacttggaaaagaatgtgttagaagaagtaatcagaagagatgagagtg |
26002622 |
T |
|
| Q |
549 |
atattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaacagcatttattag |
648 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
26002623 |
atattgaggaagcagtgaaacatggttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggttcttgctgtgtaacagcattaattag |
26002722 |
T |
|
| Q |
649 |
gaatggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcacaaaccttcgagg |
748 |
Q |
| |
|
||||| ||||||||| |||||||||| || |||||||| |||||||| || |||||| |||||| ||||||||||| |||||||||||||||||| |
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|
| T |
26002723 |
aaatggcaaccttgttatgtccaatgccggtgattgtcgtgctgtcatcagccatggaggtgctgctgaagccttaacatcagatcacaaaccttcgagg |
26002822 |
T |
|
| Q |
749 |
aaagacgaaaaggaacggattgaaactcaggtaa |
782 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| |
|
|
| T |
26002823 |
aaagacgaaaaagaacggattgagactcaggtaa |
26002856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 886 - 1098
Target Start/End: Original strand, 26003035 - 26003247
Alignment:
| Q |
886 |
agggaggatatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgat |
985 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
26003035 |
agggaggatatgtcgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggagatagacacatgaaacaatatgtgat |
26003134 |
T |
|
| Q |
986 |
agcagagcctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaat |
1085 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
26003135 |
agcagaacctgagaccaaagtactcagaattgaacctcatcatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttgaccaat |
26003234 |
T |
|
| Q |
1086 |
taattgcaatgtt |
1098 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
26003235 |
taattgcgatgtt |
26003247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 61 - 273
Target Start/End: Original strand, 26001902 - 26002114
Alignment:
| Q |
61 |
aagaaaaagagacctgctaaacttgatatacctgttgcttctctcattgttgagcttccaccagcagtaccatctccgtcggcagcgaaggatgttgttg |
160 |
Q |
| |
|
|||| |||||| || | ||| |||||||||||||||||| ||||| ||||||| | || || | ||| |||||| || | |||||||||||||||| |
|
|
| T |
26001902 |
aagagaaagaggccagataagcttgatatacctgttgctaatctcaccattgagctccagccggctgcaccgtctccgacgacggcgaaggatgttgttg |
26002001 |
T |
|
| Q |
161 |
aggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgttactctgcttctcttgatcttcatggacaatctaa |
260 |
Q |
| |
|
|||| || |||||||| ||||||||||||||||||| |||| | || || ||||||||||||||||| ||||||||| ||||||||||||| |||| || |
|
|
| T |
26002002 |
aggtggagggagatggattttctgtgtattgtaagaaaggaggtagaaaacatatggaggatcgttattctgcttctgttgatcttcatggtgaatcaaa |
26002101 |
T |
|
| Q |
261 |
acaggtaacttca |
273 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26002102 |
acaggtaacttca |
26002114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 894 - 1070
Target Start/End: Original strand, 30374295 - 30374471
Alignment:
| Q |
894 |
tatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgatagcagagc |
993 |
Q |
| |
|
||||||||| | || |||||||||||||| || ||||||||||||||||| ||||| | ||||| || ||||| ||||||||||||||| ||| |||| |
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|
| T |
30374295 |
tatgttgatttatgtcgcggtgtttggaggattcaaggatctcttgctgtatcaagaggaattggagaccgacacttgaaacaatgggtgacagcggagc |
30374394 |
T |
|
| Q |
994 |
ctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggta |
1070 |
Q |
| |
|
| ||||| ||||| | |||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
30374395 |
ccgagactaaagttattagaattgaacctgaacatgacttgttaatattagcttcagatggattatgggataaggta |
30374471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 453 - 762
Target Start/End: Original strand, 30373857 - 30374166
Alignment:
| Q |
453 |
tatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtgatat |
552 |
Q |
| |
|
|||||||||||||||||||| | ||||| | |||||||| ||| ||||| |||||||| | || || ||||| |||| || || || |||| | |
|
|
| T |
30373857 |
tatttgatggacatggaggtgccaaagccgctgaatttgcggcaaacaacttagaaaagaacatcttggacgaagttatcatgagcgacaaagatgatgt |
30373956 |
T |
|
| Q |
553 |
tgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaacagcatttattaggaat |
652 |
Q |
| |
|
|||||| |||||||||| ||||||||||| || ||||| || ||| | ||| | ||||| ||||||| ||||| || || |||||||| ||||||||| |
|
|
| T |
30373957 |
tgaggaggcagtgaagcgcggttacctcaataccgattctgagttcatgaaaaaagatctacatggtggttcttgttgtgtgacagcattcattaggaat |
30374056 |
T |
|
| Q |
653 |
ggtaaccttgttgtgtccaatgcaggcgattgtcgcgctgtcataagtagaggaggtcttgctgaggccttaacatctgatcacaaaccttcgaggaaag |
752 |
Q |
| |
|
|||||| | |||||||| ||||| || ||||| || ||||| || ||||||||||| |||||||||| |||||||||||||| ||||| ||| ||| |
|
|
| T |
30374057 |
ggtaacttagttgtgtctaatgctggtgattgccgtgctgttattagtagaggaggggttgctgaggcactaacatctgatcaccgtccttcaagggaag |
30374156 |
T |
|
| Q |
753 |
acgaaaagga |
762 |
Q |
| |
|
|||||||||| |
|
|
| T |
30374157 |
acgaaaagga |
30374166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 30373225 - 30373307
Alignment:
| Q |
145 |
gcgaaggatgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgtta |
227 |
Q |
| |
|
|||| |||||||||||||| || |||||||||| |||||| |||||||||||||| || ||| || ||||||| |||||||| |
|
|
| T |
30373225 |
gcgagggatgttgttgaggcggagggagatgggtattctgtttattgtaagagagggaggagggagtatatggaagatcgtta |
30373307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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